PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG311200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 669aa    MW: 77812 Da    PI: 7.9764
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG311200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.83.8e-2322113190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                          kfYn+YAk  GFsvrk++ +    ++e t r+fvCs++g+ree++ k ++k+r++r+ tr gC akl++ +++ +g+w+v+++  eHnH+
  Pavir.9KG311200.1.p  22 KFYNNYAKGKGFSVRKDYCEWDIGHNERTLRHFVCSCQGFREEKELKrENKKRKPRNITRFGCPAKLVIARDQnTGQWHVKDFICEHNHP 111
                          6*********************999999*************9998775789999*****************999***************9 PP

                 FAR1  89 la 90 
                          ++
  Pavir.9KG311200.1.p 112 MV 113
                          97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-2222113IPR004330FAR1 DNA binding domain
PfamPF105512.8E-19244312IPR018289MULE transposase domain
PROSITE profilePS509669.285479520IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MLGAEYNVIV RKVFDEEEEG YKFYNNYAKG KGFSVRKDYC EWDIGHNERT LRHFVCSCQG  60
FREEKELKRE NKKRKPRNIT RFGCPAKLVI ARDQNTGQWH VKDFICEHNH PMVEQDLACL  120
LRSHRRIGDE QKADIVAMQI SGIRKHQIMD IMEMLYGGYD KVGFTRRDLY NFYHRNKVDT  180
VAAGDAQTVI SYLTECRRRD PDFFFDYKTD EKGHLKGLLW CDTQSRLDFS AFGDVVIFDS  240
TYKTNRTVLF ACGVTSRETI EAYVWMLKTF TEAMAQKHPV SVITNGDLAM QRAIELVWPN  300
SSHRLCIWHI EQCIVRNLHD DGVKDDLRHF LYDCCSIEEI ERKWLQFMDK HKVTDTESWV  360
YQMYERRQRS ESLNSRLQVN LDRKMTLFEL VEHFDHCLSR LRVNEAILDL VAMSSVPCLE  420
PNASIIEKEA AKSFTPSVFA TVQFSIKAAK KCFAIEIEDD GYETIKYIVG REDKGDREYY  480
VECEICVDEG NLKGIRCSCL KLQSLGTPCS HIFFVLGDLK EQRIPKCCVL RRWTRGAKSA  540
FPPIRKSSMY DYTDSVQKYR ELCNIGHSAS FVASRSPEAY ERLKHVLEEE ATMMLPNGGE  600
NAGKRYGPVL LQAVDVDSTE SRDVMDPMYV PGRGAPKKKL KSNKNKSKRK CTLCKGEDHD  660
RRRCSMREE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16674LKRENKKRK
2635641PKKKLKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG311200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021309019.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLI1HMH80.0I1HMH8_BRADI; Uncharacterized protein
STRINGPavir.Ib02466.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-74FAR1-related sequence 5