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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.9KG136200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
MYB |
| Protein Properties |
Length: 267aa MW: 29262.7 Da PI: 9.1351 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.9KG136200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 48.2 | 2.4e-15 | 7 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
+g+W++eEd l+++ ++++G g +W + a+t+g++R++ +c+srw++yl
Pavir.9KG136200.1.p 7 KGKWSKEEDNLIKNHIEKYGIGrSWQALANTLGLRRCGRSCRSRWLNYL 55
79******************999************************97 PP
|
| 2 | Myb_DNA-binding | 28.9 | 2.7e-09 | 62 | 105 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
g++T+ E+ ++ d + G+ W+ a+++ gRt+ +k++w++
Pavir.9KG136200.1.p 62 GNFTPAEERIICDMYSKIGSC-WSVMAAKLL-GRTDLAIKNYWNST 105
89*******************.********9.***********986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 267 aa
Download sequence Send
to blast |
MRKMLKKGKW SKEEDNLIKN HIEKYGIGRS WQALANTLGL RRCGRSCRSR WLNYLRPGLK 60
HGNFTPAEER IICDMYSKIG SCWSVMAAKL LGRTDLAIKN YWNSTLKKKF PAARPSAAAA 120
FRRRNCPACS TSSDAGTPAR DLQLVSYSSE ESSTPGSSPA WPVLAGPTPV QAVQQPVPVV 180
AAQPIAAVPI SGPMKIEQKH AVVSLPHLGT PPPPPPRACD QTGESVMDIV CAPMSPVPQS 240
IMEPDELACI YQFDDIDSFL PWFDHH*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC079888 | 5e-32 | AC079888.10 Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete sequence. |
| GenBank | AP014966 | 5e-32 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012618 | 5e-32 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
