PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG110800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 719aa MW: 81446.7 Da PI: 6.4759

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG110800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	333.4	4e-102	345	715	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lL++cA+avs ++++la+ +L+ +++++s +gd +qRla++++ L+arl +++s+ly++l ++ + + l++++l v P+ Pavir.9KG110800.1.p 345 LRTLLIHCAQAVSVSNHTLASDILNIIRQNCSISGDDTQRLASCLADSLEARLDGTGSQLYQKLITKCRN---AVGFLKVFQLSLAVNPF 431 6789*******************************************************999988887...899********** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 + N++Ile ++g+++vHiiDf+i G+QWp+L+++L++R++gpp++RiTg+++p +g ++ ++tg+rLa++A+ ++vpfe+ Pavir.9KG110800.1.p 432 QMAPFHFSNKTILEVTKGKRKVHIIDFGICFGFQWPSLFEQLTKREDGPPKVRITGIEQPLPGfrPDQMNRNTGHRLAEYASMFNVPFEY 521 ********************************************************99999999999*************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 + +++++e++++e++++++ ++l+Vn+ +++++l de+vs++s+r++vL++++ ++Pkv+v+ + +++++ Fl+rf e +++ysalf Pavir.9KG110800.1.p 522 QG-ISSKWETIRIEDFHIEEVDVLIVNCLYRMEHLGDETVSVNSARNKVLDTIRMTKPKVFVHGVVNGSYSAPFFLTRFKEVMYHYSALF 610 .7************************************************************************************ PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 d le+++pr++e+r+ +Er + +i nv+aceg+er+er e+++kW++r +aG++++pl+ +++k + ++ ++++d + v e++++l Pavir.9KG110800.1.p 611 DILEKTVPRDNEARMILERDIYLCSILNVIACEGSERIERPENYKKWKSRNLKAGLEQLPLNPDIVKVTRDVVGQYHKD-FVVGEDDQWL 699 *************************************************************************77.****** PP GRAS 359 vlgWkdrpLvsvSaWr 374 +lgWk+r L ++S W+ Pavir.9KG110800.1.p 700 LLGWKGRILKAISTWK 715 *************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.994	319	696	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-99	345	715	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence Send to blast
MEFNDKSSTN FEDFSSSMSS TSGSYAPSHE FVDPANESND LKLFLHPPSS SNYYPPVSST 60 ANDEGHITSN TSYSSKTCAP QFCEVSSHVT PDWYGISVAD SSKSSWVNSD ITINYINKLL 120 MQEDNDDKVK LHHGEYALRA MEEPFYRLLG QSRPAYPLLP LCSCDHLNNL DGCMKSSGQS 180 CSSCSDYIDP TNNHPNHDLQ AVEAPWSLSD IVKETEHFAQ GTHSMDVDGL SIAEERSRDK 240 QLNVADKRLH ESSEVQCQND PHTEDFCLLE GRSRKQLAVS FNGPTRDEMF DRVLLFSEHK 300 PMDEGIVLRE KGTNKSTHQK DQGRASSARR RTRGKKQQNK EVVDLRTLLI HCAQAVSVSN 360 HTLASDILNI IRQNCSISGD DTQRLASCLA DSLEARLDGT GSQLYQKLIT KCRNAVGFLK 420 VFQLSLAVNP FQMAPFHFSN KTILEVTKGK RKVHIIDFGI CFGFQWPSLF EQLTKREDGP 480 PKVRITGIEQ PLPGFRPDQM NRNTGHRLAE YASMFNVPFE YQGISSKWET IRIEDFHIEE 540 VDVLIVNCLY RMEHLGDETV SVNSARNKVL DTIRMTKPKV FVHGVVNGSY SAPFFLTRFK 600 EVMYHYSALF DILEKTVPRD NEARMILERD IYLCSILNVI ACEGSERIER PENYKKWKSR 660 NLKAGLEQLP LNPDIVKVTR DVVGQYHKDF VVGEDDQWLL LGWKGRILKA ISTWKPND*

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence Send to blast

MEFNDKSSTN FEDFSSSMSS TSGSYAPSHE FVDPANESND LKLFLHPPSS SNYYPPVSST  60
ANDEGHITSN TSYSSKTCAP QFCEVSSHVT PDWYGISVAD SSKSSWVNSD ITINYINKLL  120
MQEDNDDKVK LHHGEYALRA MEEPFYRLLG QSRPAYPLLP LCSCDHLNNL DGCMKSSGQS  180
CSSCSDYIDP TNNHPNHDLQ AVEAPWSLSD IVKETEHFAQ GTHSMDVDGL SIAEERSRDK  240
QLNVADKRLH ESSEVQCQND PHTEDFCLLE GRSRKQLAVS FNGPTRDEMF DRVLLFSEHK  300
PMDEGIVLRE KGTNKSTHQK DQGRASSARR RTRGKKQQNK EVVDLRTLLI HCAQAVSVSN  360
HTLASDILNI IRQNCSISGD DTQRLASCLA DSLEARLDGT GSQLYQKLIT KCRNAVGFLK  420
VFQLSLAVNP FQMAPFHFSN KTILEVTKGK RKVHIIDFGI CFGFQWPSLF EQLTKREDGP  480
PKVRITGIEQ PLPGFRPDQM NRNTGHRLAE YASMFNVPFE YQGISSKWET IRIEDFHIEE  540
VDVLIVNCLY RMEHLGDETV SVNSARNKVL DTIRMTKPKV FVHGVVNGSY SAPFFLTRFK  600
EVMYHYSALF DILEKTVPRD NEARMILERD IYLCSILNVI ACEGSERIER PENYKKWKSR  660
NLKAGLEQLP LNPDIVKVTR DVVGQYHKDF VVGEDDQWLL LGWKGRILKA ISTWKPND*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-38	329	716	3	380	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG110800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797095.1	0.0	scarecrow-like protein 9 isoform X1
Refseq	XP_025797096.1	0.0	scarecrow-like protein 9 isoform X2
TrEMBL	A0A2T8I1G6	0.0	A0A2T8I1G6_9POAL; Uncharacterized protein
STRING	Pavir.Ib03899.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11788	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-146	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pavir.9KG110800.1.p