PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG082000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 303aa    MW: 34938.2 Da    PI: 9.7346
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG082000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-15291071496
                          T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          +++++p kf+++ + k   + t++le++ g s++v++   +++g++ l+ GW+ Fv+a++L+ gDf+v+ +d++ +++l   v
  Pavir.9KG082000.1.p  29 KIMTIPQKFVQRLMRK--ITGTIKLESRVGSSFDVQV--INNQGKVSLGFGWEAFVSAHDLNMGDFLVLIFDSSGCEKLSSVV 107
                          579*******999766..4459***************..99999*************************99987777666555 PP
2B3474.6e-15217301999
                          HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          +  + +++ + +++a+++       e+k+l+l+  sg+ W+v++  +k ++++ l kGWk+F+++++L+ gD+++++l +++e +++v++
  Pavir.9KG082000.1.p 217 YGRS-RCMNFARQYADAYlrF----EKKELMLQ-CSGKIWDVRC--SKVGKHTRLWKGWKQFASDKNLQLGDICLLELLRNKEYTMNVHI 298
                          4444.4489999999999642....23467755.5*********..99999999************************************ PP

                          E-S CS
                   B3  97 frk 99 
                          +r+
  Pavir.9KG082000.1.p 299 IRS 301
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.72E-1225101No hitNo description
SuperFamilySSF1019361.02E-1426100IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-627107IPR003340B3 DNA binding domain
PROSITE profilePS5086310.27831111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-1331103IPR015300DNA-binding pseudobarrel domain
PfamPF023627.1E-1331108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-21199301IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-20200300IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-4207302IPR003340B3 DNA binding domain
PROSITE profilePS5086311.378208302IPR003340B3 DNA binding domain
CDDcd100172.41E-15210300No hitNo description
PfamPF023624.8E-13217301IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSKKRESCKE RDIFFDWNHE IDQDKHFFKI MTIPQKFVQR LMRKITGTIK LESRVGSSFD  60
VQVINNQGKV SLGFGWEAFV SAHDLNMGDF LVLIFDSSGC EKLSSVVIDA THKSQRKEPV  120
GMPSPYHDIL MKSSPSANKA WEQQDSSNQG HNVIDTSSSR DATFPKEDQK VQFVPEYILP  180
CGTYLTSTQK QKVKEKVRAI HSEIPIHVCV MTKSNIYGRS RCMNFARQYA DAYLRFEKKE  240
LMLQCSGKIW DVRCSKVGKH TRLWKGWKQF ASDKNLQLGD ICLLELLRNK EYTMNVHIIR  300
SR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG082000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982411.16e-85putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBLA0A3L6TLE30.0A0A3L6TLE3_PANMI; Uncharacterized protein
STRINGPavir.Ia01267.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-14B3 family protein