PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG057800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 355aa    MW: 37972.3 Da    PI: 7.0363
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG057800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12121204455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC..................................TTS-.STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkas...............................kapskK.lsKaeiLekAveYIksLq 55 
                           h ++Er+RR++iN++f eL +++P +                                + + +  ++Ka+iL  A++Y+k+Lq
  Pavir.9KG057800.1.p 121 DHIIAERKRREKINQRFIELSTVIPGLKkdggqrppilgtvlalhlhgipefqrlevhlRDQRPLvMDKATILSDATRYVKELQ 204
                          699***********************888****************************9866666679****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.52E-13115149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.078117203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-10121204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-16121153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.67E-9122208No hitNo description
SMARTSM003537.7E-12123209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.52E-13185211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-16186208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEDTSLFIKC ATNALQHEQP AGLAAGDLLD FSEATFPSLQ ALREASHAAE MVRELITGVH  60
APNISWSSGG GGGGAASWTF GATTFAHPGS NGLRGLPDLG HGAPPTRRAG VGSMSASYAQ  120
DHIIAERKRR EKINQRFIEL STVIPGLKKD GGQRPPILGT VLALHLHGIP EFQRLEVHLR  180
DQRPLVMDKA TILSDATRYV KELQEKLKDV EAGASSGRSI ETRLVLVKRP CLHAEAAAAG  240
DDGSQRSASP GTPPAATKEL PEIEVRFSEK NVMVRVHCEK SKGVAVKVLA EIEGLQLTVV  300
HANVMLFSAC TLIIAITAKV EEGFSATKEE IVHRLDSALL NLQHSRICNS TEET*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130ERKRRE
2126131RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG057800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3646673e-34AK364667.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2027G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796507.11e-177transcription factor bHLH25-like
RefseqXP_025796508.11e-177transcription factor bHLH25-like
TrEMBLA0A2T8I1A91e-176A0A2T8I1A9_9POAL; Uncharacterized protein
STRINGPavir.Ib04190.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-38bHLH family protein