PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG254500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 754aa MW: 87362 Da PI: 6.7523

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG254500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.4	3.6e-21	98	217	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............................tekerrtraetr 59 +fYn+YAk++GFsv++s+++ s+ ++e k +fvC+keg+++++k++ k+r++++ + Pavir.8NG254500.1.p 98 EFYNSYAKRIGFSVCTSTTRLSRVTREQNKVQFVCNKEGRQRKTKEEqpvaetddsnfdedsdpndcdegaekkkkldGGKKRKREKMIH 187 6***************************************999999*********************999988889999999 PP FAR1 60 tgCkaklkvkkekdgkwevtkleleHnHela 90 t+Ckak++vk+ +kw+v++++ HnH+l+ Pavir.8NG254500.1.p 188 TNCKAKMVVKLI-ASKWHVINFVPYHNHDLV 217 **********.9************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-19	98	217	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.7E-33	341	433	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.606	622	658	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0074	633	660	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MDLNQFPSEV DFDFLDAVNT SPSYCTQVPL VDASLEGDEH NGIDNPSNAD ATTQNAHGCP 60 LNNQESTVVT EEVVEDIWLT PPVPYTGQAF STKQEAREFY NSYAKRIGFS VCTSTTRLSR 120 VTREQNKVQF VCNKEGRQRK TKEEQPVAET DDSNFDEDSD PNDCDEGAEK KKKLDGGKKR 180 KREKMIHTNC KAKMVVKLIA SKWHVINFVP YHNHDLVLKT SLKKFLRSHK GIPKEEKDFI 240 ALLHGSNLCT GRIMQLMNKF YGSAQLVPYE GKDVSNFRST IRKAEKYKDV QETLDYFKEL 300 EDQDAEFFYK IKLDEDNRVE CLFWVDGAAR RAYIELYNDL VSFDATYMTN MYDMPFAPFI 360 GINKHGQSFM LGCGFIRDEK TPSYVWLFET FLEAMQGKAH VSIITDQDGA MRCAIAQTFP 420 NTNHRNCRWH IMDKFTGTIG PILDKDEKLE DDFKECMNYT VSPDEFEVKW SAMISKYNLQ 480 ENVHFQHLYA IRSSFVPAYY MHCFYPFLQS TQRSEGFNAV LKKYVNPNMS ILHFVRQYQK 540 IQDKCLVAQD GQDFRTDDKE RRRWSRYPIE KHALTVFTKN LFYRFSKEFE KTAEYDVTPE 600 GQFQYLLVPN NNFVYGYGKR TYLVTAVVEE ESYYCECSKF DRDGMLCCHI MKILTRLGVK 660 NIPQRYILNR WTQEAIQGGE NTEPNAHVPA EFIARGMPLN TKRTLWFTNL STAFASLAVE 720 GCVSKETYIV MDKHIKLMQA EIAEIKQRKK SNA*

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MDLNQFPSEV DFDFLDAVNT SPSYCTQVPL VDASLEGDEH NGIDNPSNAD ATTQNAHGCP  60
LNNQESTVVT EEVVEDIWLT PPVPYTGQAF STKQEAREFY NSYAKRIGFS VCTSTTRLSR  120
VTREQNKVQF VCNKEGRQRK TKEEQPVAET DDSNFDEDSD PNDCDEGAEK KKKLDGGKKR  180
KREKMIHTNC KAKMVVKLIA SKWHVINFVP YHNHDLVLKT SLKKFLRSHK GIPKEEKDFI  240
ALLHGSNLCT GRIMQLMNKF YGSAQLVPYE GKDVSNFRST IRKAEKYKDV QETLDYFKEL  300
EDQDAEFFYK IKLDEDNRVE CLFWVDGAAR RAYIELYNDL VSFDATYMTN MYDMPFAPFI  360
GINKHGQSFM LGCGFIRDEK TPSYVWLFET FLEAMQGKAH VSIITDQDGA MRCAIAQTFP  420
NTNHRNCRWH IMDKFTGTIG PILDKDEKLE DDFKECMNYT VSPDEFEVKW SAMISKYNLQ  480
ENVHFQHLYA IRSSFVPAYY MHCFYPFLQS TQRSEGFNAV LKKYVNPNMS ILHFVRQYQK  540
IQDKCLVAQD GQDFRTDDKE RRRWSRYPIE KHALTVFTKN LFYRFSKEFE KTAEYDVTPE  600
GQFQYLLVPN NNFVYGYGKR TYLVTAVVEE ESYYCECSKF DRDGMLCCHI MKILTRLGVK  660
NIPQRYILNR WTQEAIQGGE NTEPNAHVPA EFIARGMPLN TKRTLWFTNL STAFASLAVE  720
GCVSKETYIV MDKHIKLMQA EIAEIKQRKK SNA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	184	KKRKREKM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG254500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021311908.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1W0VY60	0.0	A0A1W0VY60_SORBI; Uncharacterized protein (Fragment)
STRING	Pavir.Ha00557.1.p	0.0	(Panicum virgatum)
STRING	Pavir.J00899.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-95	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.8NG254500.1.p