PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 318aa MW: 34597.9 Da PI: 5.8435

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG142000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.5	1e-07	135	179	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr+RR+++ ++++ L ++ + K +K +i++ A YI++L Pavir.8NG142000.1.p 135 HMMRERQRREKLSQSYADLYAMVAAR-----SKGDKNSIVQSAAIYIHEL 179 889********************7.....6999999*******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.02E-12	130	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.395	130	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.21E-8	134	184	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-9	135	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-5	135	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.8E-5	136	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MQMDSYFYAG FFHDEAPLYP HGAVPPSPEL PFGLIASPGE PEPPFPAPPA PRPAAFQDYS 60 VAGPELLPPA VGAGEPHYWS AGASVHMRVV DALGGMGGDP VHDQTMGEEW KEEPRRQRQQ 120 QPAGAAVESS RGFRHMMRER QRREKLSQSY ADLYAMVAAR SKGDKNSIVQ SAAIYIHELK 180 GAREQLLQRN EELKAQILGH DARQQCVKVQ FEVDEPASSI DSMIGALQRL KGMDVRARGI 240 RSTMSGRRLW TEMNVETTIA AVDVEKAVEE ALMQEVERNQ PQPQPVEAGS GGPGLPGTSA 300 GARGWGPQAS SHVQNVF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.13037	0.0	stem

Functional Description ? help Back to Top
Source	Description
UniProt	May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269\|PubMed:21332845}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG142000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269\|PubMed:21332845}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU955623	1e-164	EU955623.1 Zea mays clone 1539864 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794972.1	0.0	transcription factor BHLH148-like
Swissprot	Q75KV9	1e-108	BH148_ORYSJ; Transcription factor BHLH148
TrEMBL	A0A2S3II72	0.0	A0A2S3II72_9POAL; Uncharacterized protein
STRING	Pavir.J38335.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5940	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	1e-19	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.8NG142000.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217]