PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.8NG054000.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 476aa MW: 52263.3 Da PI: 6.5539

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.8NG054000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.2	2.7e-11	171	199	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka+i++Le Pavir.8NG054000.2.p 171 KTIRRLAQNREAARKSRLRKKAYIQQLES 199 6789***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.3E-6	167	242	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.956	169	213	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.2E-8	169	212	No hit	No description
SuperFamily	SSF57959	3.7E-7	171	205	No hit	No description
Pfam	PF00170	1.4E-8	171	204	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	174	189	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.8E-30	251	324	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MGETSSSSHS RQDPYALGYG FHGAIANSTP NFFDQEGATY FGELEEAFMH QVASLRRTQA 60 ATTSTAHHGD ATPFSTATAA TATARPPPTL DIFPAWPMRS LHTPKGSNLT ADSTEDSESS 120 SKNNSNHSSD QHGATENMVS QFDQGSQQQE IQHKNMATSY TTKSGKTLDP KTIRRLAQNR 180 EAARKSRLRK KAYIQQLESS KLKLAQMEQD MQRPRSQGLF LGGTPGANTS SGAAMFDVEY 240 ARWLDDHGRR MAELHGALQA HLPDSDLRAI VDDALTHHDE LFQLKAMAAK SDVFHLITGV 300 WTTPAERCFL WMGGFRPSDL LKTLLPQLDP LTEQQLVGIC NLQQSSQQAE EALSQGLEQL 360 HQSLADTMAG GSLIDDANMS FMGQMALALG KLSNLEGFVI QADNLRQQTL HQMHRILTVR 420 QAARCFLAIG EYHNRLRALS SLWASRPREM LVTDEGNCGE ISIAAQPSQS QFSAF*

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MGETSSSSHS RQDPYALGYG FHGAIANSTP NFFDQEGATY FGELEEAFMH QVASLRRTQA  60
ATTSTAHHGD ATPFSTATAA TATARPPPTL DIFPAWPMRS LHTPKGSNLT ADSTEDSESS  120
SKNNSNHSSD QHGATENMVS QFDQGSQQQE IQHKNMATSY TTKSGKTLDP KTIRRLAQNR  180
EAARKSRLRK KAYIQQLESS KLKLAQMEQD MQRPRSQGLF LGGTPGANTS SGAAMFDVEY  240
ARWLDDHGRR MAELHGALQA HLPDSDLRAI VDDALTHHDE LFQLKAMAAK SDVFHLITGV  300
WTTPAERCFL WMGGFRPSDL LKTLLPQLDP LTEQQLVGIC NLQQSSQQAE EALSQGLEQL  360
HQSLADTMAG GSLIDDANMS FMGQMALALG KLSNLEGFVI QADNLRQQTL HQMHRILTVR  420
QAARCFLAIG EYHNRLRALS SLWASRPREM LVTDEGNCGE ISIAAQPSQS QFSAF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.5607	0.0	callus\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.8NG054000.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF111321	0.0	KF111321.1 Zea mays cultivar B73 basic leucine zipper transcription factor mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828230.1	0.0	transcription factor TGAL4-like isoform X2
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A2T8I7K1	0.0	A0A2T8I7K1_9POAL; Uncharacterized protein
STRING	Pavir.Hb01807.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-139	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.8NG054000.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]