PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG370900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HB-other
Protein Properties Length: 928aa    MW: 102360 Da    PI: 5.3394
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG370900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.53.5e-06696756154
                          TT--SS--HHHHHHHHHHHHHSSS--HHHH..HHHHHHC.....TS-HHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeer..eeLAkkl.....gLterqVkvWFqNrRak 54 
                          rrkRt +++eq++eLe++   ++ + ++++  +  ++kl     ++t +q k+W  Nr+ak
  Pavir.8KG370900.1.p 696 RRKRTLMNDEQIDELEKALVDEPEMHKNAIllQNWSEKLsvqgpEITASQLKNWLNNRKAK 756
                          89******************99999999876689999999999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-6674757IPR009057Homeodomain-like
SuperFamilySSF466891.57E-5692762IPR009057Homeodomain-like
PROSITE profilePS5007110.56693760IPR001356Homeobox domain
SMARTSM003892.1E-4695764IPR001356Homeobox domain
CDDcd000861.50E-5696759No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0060195Biological Processnegative regulation of antisense RNA transcription
GO:0005730Cellular Componentnucleolus
GO:0003697Molecular Functionsingle-stranded DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 928 aa     Download sequence    Send to blast
MIDMVSAIEE LSGLTSKELG EMLKDSDSFV LQSKADDGGP KQVDMEKLVS SLPLHLLAVC  60
FELGQGSDLA YVLRGVRFLH SLSELASRHT RLEQILLDDV RLSEQVMDLI FFLLSILARR  120
KKENNVGASP LVHASLVAAS LHLLTSYFSS QWHELVHILL AHPKVDIFLD VAFDSLHEDM  180
RLLSFRLSSM GFGSTPSSLE CRLAHFICQQ CEASLQFLLL LCQQKLFQDR ILKNKELSRN  240
GGILSLSHTI LKLVVPDCLK GSTDTVASIS RLKAMILSIV VQLCEAESVS YLDEVASSPN  300
SMRLGQTLAL EVLNLLNTAF GRKQQNTSDS HDKSYPMGSV LINALRLVDV FSDDSNFRSS  360
FLINTVPFLT QILAIPHDEF VLSWCSVNLP VVEEDANLDY DPFGAAEVAL LASDNVLTEA  420
KANYSCPFRP SLPSMAYAQT RTSCVVKIIA NLHVFVPNIC EEQERDLFLQ NFQKYLVSGS  480
PKLSADQPAS NDFKATKVCK NLGSLSDYAK TLIPNLLNEE DVQLLSEFSD KLQFWCKSQA  540
GQAALLVGHT DSPESKEDMK PVQQSLPTQA STLDPNMNNL PKDVQNMEVS IPVSSINPEG  600
NAKDQTPKNC VARNGSFLQN AVGQDLVHLG VARTANAGFS SISSGVNTGH QRSKMDLDPA  660
SSSVDHFKTS ELSKESSLQE DEKGESSVYD ERQPKRRKRT LMNDEQIDEL EKALVDEPEM  720
HKNAILLQNW SEKLSVQGPE ITASQLKNWL NNRKAKLARI AKERGVPFEG ENADKPSTPA  780
TPHLGESSES AGEDSYMPPA RVMNAISKGR LVSPDGNELT SQAEFSQNMM LSRPFTRSFS  840
FEPGRLVSLV DGDGKEVGRG KIVHPPPVKS SMETRLCVVD VTELRIEKWR ELPHPSEASG  900
RTFQEAEVRN GGVIRVPWDA VRLAPVT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.22680.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG370900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827632.10.0nodulin homeobox isoform X1
TrEMBLA0A3L6PIS70.0A0A3L6PIS7_PANMI; Uncharacterized protein
STRINGPavir.Hb00221.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51261418