PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG346000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 323aa    MW: 34072.6 Da    PI: 8.034
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG346000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.82.4e-4179155278
                          -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          C v+gC++dls+++eyhrrh+vCe+hsk+pvv+v g+eqrfCqqCsrfh+lsefDe+krsCr+rL++hn+rrrk+q+
  Pavir.8KG346000.1.p  79 CSVDGCRSDLSRCREYHRRHRVCEAHSKTPVVVVGGQEQRFCQQCSRFHMLSEFDEGKRSCRKRLDGHNRRRRKPQH 155
                          **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-3373140IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.44576153IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.4E-3978157IPR004333Transcription factor, SBP-box
PfamPF031106.8E-3179152IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDWAAASGSG APSWGSAAAD PGPTMLSFAG PSSSSSSSAA AAEARLHDFA AGLAQRARPA  60
GAAGAGRRSR SAGGGTEACS VDGCRSDLSR CREYHRRHRV CEAHSKTPVV VVGGQEQRFC  120
QQCSRFHMLS EFDEGKRSCR KRLDGHNRRR RKPQHDLANL GGFFPYHQVN QFEIYPRTIP  180
TALQDSDDMS LVDPQPPFSI SFSRTPKQFP FPHDGGSLLS ASRHGHFLVQ DGNHTGSSAC  240
SHDLSGTLGP ECALSLLSSS LHHPSPSGHA QVASALSHIA STSQQVAATA VTTAFASGGG  300
HHVFVPDAAL EDPSQALPFP WQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-2771152384squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135152KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG346000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826748.11e-164putative squamosa promoter-binding-like protein 19
SwissprotQ2R3Y13e-92SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19
TrEMBLA0A3L6PNI81e-174A0A3L6PNI8_PANMI; Putative squamosa promoter-binding-like protein 19
STRINGPavir.Hb01173.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129612532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-40SBP family protein