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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.8KG083200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
NAC |
Protein Properties |
Length: 363aa MW: 38523.1 Da PI: 5.1119 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.8KG083200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 160.3 | 7.3e-50 | 9 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lppGfrFhPtdeelv++yL +k+ g + vi+evd+yk++Pw+Lp++++++ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk
Pavir.8KG083200.1.p 9 LPPGFRFHPTDEELVTHYLLRKCGGLAPAA-PVIAEVDLYKFDPWSLPERAAGGEKEWYFFSPRDRKYPNGSRPNRAAGAGYWKATGADK 97
79************************9777.89***************999999************************************ PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+v + + v +kk Lvfy g+ p+g+kt+W+mheyrl
Pavir.8KG083200.1.p 98 PVGA--PRPVAIKKALVFYAGKPPRGVKTNWIMHEYRL 133
**99..779***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 363 aa
Download sequence Send
to blast |
MDFGGALQLP PGFRFHPTDE ELVTHYLLRK CGGLAPAAPV IAEVDLYKFD PWSLPERAAG 60 GEKEWYFFSP RDRKYPNGSR PNRAAGAGYW KATGADKPVG APRPVAIKKA LVFYAGKPPR 120 GVKTNWIMHE YRLADVDRSA AARKKTANNN NALRLDDWVL CRIYNKKGVI ERYDTVDDDE 180 VAAANDVKPA APKNPRGAAG AGGGRAPMKV EMADYGGYYD DGYDLETPSA GMLCFDRPAA 240 VAPVPALAPA PALSPAAEPD PDRDSTSMPW GHTDNSSSGS EHVLSPSPDL PDRDHAESQP 300 GGGGGAAWWP GAADWAGDDG LVVLDDGGAA LFGPPSPGLF ARVDAAAAAA FGDMFAYLQR 360 PF*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots and embryo. Weakly expressed in callus. {ECO:0000269|PubMed:10660065}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269|PubMed:20632034}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK357207 | 1e-158 | AK357207.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1048E22. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Sperotto RA, et al.
Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains. J. Plant Physiol., 2010. 167(17): p. 1500-6 [PMID:20580124] - Takasaki H, et al.
The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice. Mol. Genet. Genomics, 2010. 284(3): p. 173-83 [PMID:20632034] - Kan CC,Chung TY,Juo YA,Hsieh MH
Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots. BMC Genomics, 2015. 16(1): p. 731 [PMID:26407850]
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