PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8KG035000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 338aa MW: 38255.1 Da PI: 8.3367 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 238.7 | 2.5e-73 | 3 | 314 | 110 | 374 |
GRAS 110 ervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL... 194 + v iiD++ s ++ QW+ Ll+ + R++gpp++R+T+v++ +++ l +++ L++ A++l++pf+f+ v rle+l+l++L Pavir.8KG035000.1.p 3 KVVRIIDLSCStaHPWQWLKLLHDFHGRQGGPPEVRLTVVHD----DNDYLANMRILLSNEADKLKIPFQFSS-VIGRLETLDLSNLrnt 87 6789****87633799**************************....9**************************.6899999999888544 PP GRAS 195 .rvkpgEalaVnlvlqlhrll...........................................desvsleserdevLklvkslsPkvvv 240 ++k gEa+a++++lq+hrll + + ++++ ++L++v+ l+P+++ Pavir.8KG035000.1.p 88 lDIKYGEAIAISCSLQMHRLLvvddkvscsgigqlqkmaniaqlnqmassvyspastlnypqtpSPQCKMPKLLATFLSAVRALKPNIML 177 47777********************************************************99988888999999*************** PP GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327 v+eq+a+hn+ F +rf+eal+yy+alfds++a ++++ +er+ vEr++lg+ei+n++ ceg r erhe+l++W + ++++GF v Pavir.8KG035000.1.p 178 VMEQDANHNALLFCDRFAEALNYYAALFDSFHAVVAANPrraDERSRVERMILGEEIKNILLCEGVYRHERHERLSQWAMHMDRSGFDHV 267 *******************************87764443344************************************************ PP GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 pls +a + + l ++ +g + + e+++l+l+W +r L+s+SaWr Pavir.8KG035000.1.p 268 PLSFRAIWEGNQKLMSFGLNGCQSKVENDCLLLCWGSRHLYSISAWR 314 **********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 33.381 | 1 | 294 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.6E-71 | 3 | 314 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MNKVVRIIDL SCSTAHPWQW LKLLHDFHGR QGGPPEVRLT VVHDDNDYLA NMRILLSNEA 60 DKLKIPFQFS SVIGRLETLD LSNLRNTLDI KYGEAIAISC SLQMHRLLVV DDKVSCSGIG 120 QLQKMANIAQ LNQMASSVYS PASTLNYPQT PSPQCKMPKL LATFLSAVRA LKPNIMLVME 180 QDANHNALLF CDRFAEALNY YAALFDSFHA VVAANPRRAD ERSRVERMIL GEEIKNILLC 240 EGVYRHERHE RLSQWAMHMD RSGFDHVPLS FRAIWEGNQK LMSFGLNGCQ SKVENDCLLL 300 CWGSRHLYSI SAWRPHKGST SGSREHMLVQ PQRQIIG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 9e-17 | 19 | 314 | 123 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8KG035000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826866.1 | 0.0 | scarecrow-like protein 3 | ||||
TrEMBL | A0A3L6Q0N9 | 0.0 | A0A3L6Q0N9_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Hb01985.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 1e-71 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8KG035000.1.p |