PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG034900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 465aa    MW: 48509.2 Da    PI: 9.2508
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG034900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1211.4e-37212503229
                 GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaay...fteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                          ++L  cA  v++g +e+a + +a  +   asp  +++ R  a    ++  La+rl r v  +++a    ++++ +   + aa++ f+e+s
  Pavir.8KG034900.1.p  21 RALCVCAADVEAGCMEKAAQKIAACRGPrASPPPRATARCRAWprpVADCLARRLIRPVVPVVAAALIDPSDHLDRRCVRAARRSFFELS 110
                          68999*********99888888888776599999999999886555899********8888887777777777778888899999***** PP

                 GRAS  89 PilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                          P++k +  +aN+ Ilea+e+e+ vH+iDf   + q+ QW+ Ll+ + s+peg+p+lR+T v++    + e l ++ e La+ A+el+vpf
  Pavir.8KG034900.1.p 111 PFPKAAVAVANRFILEAMENEKNVHVIDFAgpAAQPCQWVQLLRDFHSQPEGAPHLRLTIVHD----DGEFLAKVSESLADEADELDVPF 196
                          *****************************75589*****************************....9********************** PP

                 GRAS 177 efnvlvakrledleleeL....rvkpgEalaVnlvlqlhrlldesvsleserdevLk 229
                          + +  va ++e+l+l++L     +k+gEa a+ +  +lhrll+   + +s  ++ L+
  Pavir.8KG034900.1.p 197 QVHC-VAGQIETLDLNDLhgvlGLKSGEARAIVCTTRLHRLLAAADDAAS--SSSLS 250
                          ****.7999*****999966667889****************77666655..45555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.9451444IPR005202Transcription factor GRAS
PfamPF035145.0E-3521250IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MHGPPTESEN GPAWGQAHLG RALCVCAADV EAGCMEKAAQ KIAACRGPRA SPPPRATARC  60
RAWPRPVADC LARRLIRPVV PVVAAALIDP SDHLDRRCVR AARRSFFELS PFPKAAVAVA  120
NRFILEAMEN EKNVHVIDFA GPAAQPCQWV QLLRDFHSQP EGAPHLRLTI VHDDGEFLAK  180
VSESLADEAD ELDVPFQVHC VAGQIETLDL NDLHGVLGLK SGEARAIVCT TRLHRLLAAA  240
DDAASSSSLS SVGHHSNQMA ASIARLQQMA ASGSCPATIC GAACEDDDGD PYRSPATPLG  300
FVSPPLTTPP FQMMPAALAG FLSAARGGAR DRGPRGVGGR PQRRLLPEAV RRGAALLRGG  360
LRQPGRGGGG APTARRGAGG GGARGAGRGG PGRAPAGGLD RLQQWARRME AAGFRGVALS  420
DAALRQGWTR WGGAAWGGSA YGVGSGCHLS PPAPRRLCLS AKSW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG034900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827469.11e-167scarecrow-like protein 3
TrEMBLA0A3L6PHS51e-165A0A3L6PHS5_PANMI; Scarecrow-like protein 3
STRINGSi028262m1e-164(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-29scarecrow-like 3