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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.8KG002600.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
GRAS |
Protein Properties |
Length: 667aa MW: 70706.1 Da PI: 6.4493 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.8KG002600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 408 | 8.8e-125 | 297 | 659 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPi 90
+lLl+cAe v++++l a+++L ++ ela+p g+++qR+aayf+eA++arl++s+ +ly+ lpp + + + + +++aa+++f+ +sP+
Pavir.8KG002600.1.p 297 LTLLLQCAESVNADNLDDAHQTLLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPPASPAAARlHGRVAAAFQVFNGISPL 386
579************************************************************77666655548899999********** PP
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
+kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g+ s ++l++tg+rL++fA++lg+pfef +
Pavir.8KG002600.1.p 387 VKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMDALQATGKRLSDFADTLGLPFEFCA 472
***********************************************************....*************************** PP
GRAS 181 lvakrledleleeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
va++ ++++++L v ++Ea+aV++ + h+l+d +++ ++ +L+l+++l Pkvv++veq+++h s+sFl+rf+ea++yysalf
Pavir.8KG002600.1.p 473 -VAEKAGNVDPDKLlgGVARREAVAVHWLH--HSLYDVTGNDSN----TLWLIQRLAPKVVTMVEQDLSH-SGSFLARFVEAIHYYSALF 554
.7************99999**********9..999988888888....**********************.899**************** PP
GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
dsl+a+++++s er++vE++ll+rei+nv+a g +r+ + + +++Wre+l ++GF++++l +aa+qa+lll +++sdgy++ ee+g+l
Pavir.8KG002600.1.p 555 DSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGSWREKLAQSGFRSASLAGSAAAQASLLLGMFPSDGYTLVEENGAL 643
************************************999987.*********************************************** PP
GRAS 359 vlgWkdrpLvsvSaWr 374
lgWkd L+++SaWr
Pavir.8KG002600.1.p 644 KLGWKDLCLLTASAWR 659
***************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 667 aa
Download sequence Send
to blast |
MGSSSLLLFP SSSSAAPPPT ASAAYSHATS SHSLLPPLPS SQDHLLLHYL HLAEHHQESA 60 AAAMVRKRPA PDMDLPPPRR HVTGDLSDVT AAAAGAGGQP PHQSPASAQL PALPTQLQLP 120 AFQQQQQHAE VEAPPAAAGE VAASTTAWVD GIIRDIIGSS GGAGVSIAQL IHNVREIIHP 180 CNPGLASLLE LRLRSLLNAD PAPPPLPHPP ALLHSTPPAA APAVPALPPP HPLPDKRRHD 240 PQQQEEPNPA PQSPKPPTAE ETAAAAAAAA AAAAAAAKER KEEQRRKQRD EEGLHLLTLL 300 LQCAESVNAD NLDDAHQTLL EIAELATPFG TSTQRVAAYF AEAMSARLVS SCLGLYAPLP 360 PASPAAARLH GRVAAAFQVF NGISPLVKFS HFTANQAIQE AFEREERVHI IDLDIMQGLQ 420 WPGLFHILAS RPGGPPRVRL TGLGASMDAL QATGKRLSDF ADTLGLPFEF CAVAEKAGNV 480 DPDKLLGGVA RREAVAVHWL HHSLYDVTGN DSNTLWLIQR LAPKVVTMVE QDLSHSGSFL 540 ARFVEAIHYY SALFDSLDAS YGEDSPERHV VEQQLLSREI RNVLAVGGPA RTGDVKFGSW 600 REKLAQSGFR SASLAGSAAA QASLLLGMFP SDGYTLVEEN GALKLGWKDL CLLTASAWRP 660 IQTPCR*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in early stages of lateral root primordium formation, becoming restricted to the endodermal cell lineage at later stages. {ECO:0000269|PubMed:10948251}. |
Uniprot | TISSUE SPECIFICITY: Expressed in the root endodermis and in a single file of cells through the quiescent center. {ECO:0000269|PubMed:10948251}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in establishing and maintaining the correct radial pattern in the root apical meristem. {ECO:0000269|PubMed:10948251}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT063682 | 0.0 | BT063682.1 Zea mays full-length cDNA clone ZM_BFc0094J16 mRNA, complete cds. |