 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.7NG333200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
TCP |
| Protein Properties |
Length: 183aa MW: 18722.3 Da PI: 10.9376 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.7NG333200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 35 | 4.9e-11 | 48 | 127 | 9 | 89 |
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssasnsssg......... 88
+++h+kv+gR+RRvR+++ caar WLl+qa+ +i ++tg+++++a +c+++ s ss ++ +
Pavir.7NG333200.1.p 48 KDRHSKVNGRGRRVRMPIVCAAR------------------WLLRQAELSILAATGSGTTPAvFSCSSAPSTSSPAA---Aahpvlgkrp 116
8**********************..................****************99999444522222222221...1122344444 PP
TCP 89 ..........k 89
+
Pavir.7NG333200.1.p 117 redhepapapA 127
44343333330 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 183 aa
Download sequence Send
to blast |
MASRDAATTF QVYRPMPAPT PAPAPMSLAA AADVAAPAPK KASPGAGKDR HSKVNGRGRR 60
VRMPIVCAAR WLLRQAELSI LAATGSGTTP AVFSCSSAPS TSSPAAAAHP VLGKRPREDH 120
EPAPAPAPFW ATLQARPVAW GLSPAQEAAA QAYASVAAQQ GHHLNLLSVL SGAARPSEEE 180
SR*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ727696 | 2e-52 | KJ727696.1 Zea mays clone pUT5635 TCP transcription factor (TCP14) gene, partial cds. |
