PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG315200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 359aa    MW: 39900.2 Da    PI: 6.1059
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG315200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.45.7e-12177222247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          g W +eE+ l++++ k +G g+Wk I++++ ++Rt+ q+  + qky
  Pavir.7NG315200.1.p 177 GFWNEEEHRLFLHGLKVYGRGNWKNISKYFVTTRTPVQISGHAQKY 222
                          77*****************************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071770668IPR001005SANT/Myb domain
PROSITE profilePS5129413.325171227IPR017930Myb domain
SuperFamilySSF466893.14E-14173226IPR009057Homeodomain-like
SMARTSM007175.4E-9175225IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-10177218IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-11179225IPR006447Myb domain, plants
PfamPF002492.6E-9179222IPR001005SANT/Myb domain
CDDcd001671.60E-9179223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDPINFNGEW SASEIQIVRS LIARYNANNS YVGDMNKKNN DIVNEIQAMF PLKAKHQVIR  60
LYANLVVEMI QSGTGNNTYH FVEASENIMN NNYEIPVKDS TMNNTRVAQD VPCGHPAPQM  120
KSPLTEFGTM EKHRNEVTRD VVDHNFEIPI KDPTMDNIRA VHDVPRSQPA PQKKLTGFWN  180
EEEHRLFLHG LKVYGRGNWK NISKYFVTTR TPVQISGHAQ KYFLMQGNTS RKQRYSINDV  240
GLHDIEPGVQ NNTSGREGHA FDGGANNPNN YGASGQHTTM NNPDQVQSPI PYHASQANID  300
GSQAPAGAGA SNHQQMGATS SSTVPITEGA GGSQAAWTSD HLEDFFFEDE MMDMGDMF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG315200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966689.11e-112uncharacterized protein LOC101759880
TrEMBLA0A3L6PUM31e-173A0A3L6PUM3_PANMI; Uncharacterized protein
STRINGPavir.Gb00821.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10580.21e-20MYB_related family protein