PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG295800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 201aa    MW: 21065.1 Da    PI: 6.526
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG295800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.8e-171765255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+G+r  +++g+Wv+eIr+p++   ++r++lg+f tae+Aa a++ a+++l+g
  Pavir.7NG295800.1.p 17 YYRGIR--SRSGKWVSEIREPRK---TRRIWLGTFPTAEMAAVAYDVAARALRG 65
                         59***6..678*********843...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-291779IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-271774IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-181774IPR016177DNA-binding domain
PROSITE profilePS5103220.311773IPR001471AP2/ERF domain
PfamPF008473.5E-91865IPR001471AP2/ERF domain
CDDcd000183.28E-251875No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MSDHGGPASP RTGKHPYYRG IRSRSGKWVS EIREPRKTRR IWLGTFPTAE MAAVAYDVAA  60
RALRGPDTVV NFPDLAASRP APASTSADDI RAAAAEAAAA LQEPDRRRAR GIAPAAAGGD  120
AQQQQTAGGS SGAAPQQEGG GSGAGSHYFL DDEALFETPQ YLRNMAAGMM MSPPRLGHNS  180
SDDSPDPSEA GDSLWSYRDP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1214731172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG295800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557511e-133EU955751.1 Zea mays clone 1544743 ap2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825905.11e-119ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ905e-47ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A2T7CYV71e-117A0A2T7CYV7_9POAL; Uncharacterized protein
TrEMBLA0A2T8IDH91e-117A0A2T8IDH9_9POAL; Uncharacterized protein
STRINGPavir.Gb00885.1.p1e-141(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-31ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]