PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG069200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 163aa MW: 17869.1 Da PI: 8.0625 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41.1 | 2.9e-13 | 28 | 53 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ Pavir.7NG069200.1.p 28 DQPECQFYMKTGDCKFGAVCKFHHPR 53 689*********************96 PP | |||||||
2 | zf-CCCH | 38.8 | 1.6e-12 | 73 | 98 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+f++r+G Ck+G++CkF H+ Pavir.7NG069200.1.p 73 PGEPICSFYSRYGMCKFGPNCKFDHS 98 5899*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.53 | 26 | 54 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-5 | 26 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-10 | 28 | 53 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 29 | 55 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-5 | 32 | 54 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-7 | 71 | 98 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.14 | 72 | 100 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.9E-7 | 72 | 99 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-9 | 74 | 98 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-5 | 77 | 99 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MFSSYQAGSV PVGLYAVQRE NVFPERPDQP ECQFYMKTGD CKFGAVCKFH HPRERIIPTP 60 NCALSSLGLP LRPGEPICSF YSRYGMCKFG PNCKFDHSIG TVMYGHASSP SSEVSTSRLM 120 LAHVPSHPEV SPDNGSGMSR RITRSDSQQI SSGERSTERE AS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG069200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034178 | 1e-148 | BT034178.1 Zea mays full-length cDNA clone ZM_BFc0032H13 mRNA, complete cds. | |||
GenBank | BT060843 | 1e-148 | BT060843.1 Zea mays full-length cDNA clone ZM_BFb0059K13 mRNA, complete cds. | |||
GenBank | BT064219 | 1e-148 | BT064219.1 Zea mays full-length cDNA clone ZM_BFc0149L04 mRNA, complete cds. | |||
GenBank | BT085745 | 1e-148 | BT085745.1 Zea mays full-length cDNA clone ZM_BFc0056E16 mRNA, complete cds. | |||
GenBank | EU956984 | 1e-148 | EU956984.1 Zea mays clone 1579587 zinc finger CCCH type domain-containing protein ZFN-like mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827472.1 | 1e-108 | zinc finger CCCH domain-containing protein 63 isoform X1 | ||||
Refseq | XP_025827474.1 | 1e-108 | zinc finger CCCH domain-containing protein 63 isoform X2 | ||||
Swissprot | Q2R4J4 | 8e-96 | C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63 | ||||
TrEMBL | A0A2S3IE39 | 1e-107 | A0A2S3IE39_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8I903 | 1e-107 | A0A2T8I903_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6PK25 | 1e-106 | A0A3L6PK25_PANMI; Zinc finger CCCH domain-containing protein 63 isoform X2 | ||||
STRING | Pavir.Ha00517.1.p | 1e-117 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16540.3 | 3e-54 | zinc finger nuclease 3 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG069200.1.p |
Publications ? help Back to Top | |||
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