PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG059400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 174aa    MW: 18425.8 Da    PI: 7.9594
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG059400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-054466123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C++C + F++   L  H+++H
  Pavir.7NG059400.1.p 44 YTCGYCRREFRSAQALGGHMNVH 66
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575129No hitNo description
SuperFamilySSF576672.12E-64271No hitNo description
PfamPF139129.7E-64467IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0744471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MESRDHGRAL KQLPSRTPAA GHNLSLAGCF PWPPPQRSLS SSSYTCGYCR REFRSAQALG  60
GHMNVHRRDR ARLRQCCSPA TYPSSLPGPS LAAPHQHRAP LPNLNYSPPH CAAPTAAAEP  120
VIYSFFSTTT STVAAAALEV SLELGIGVCG CGGEAVELAE GLDLELRLGC AWE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG059400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9591937e-49EU959193.1 Zea mays clone 211832 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975075.22e-71transcriptional regulator SUPERMAN
TrEMBLA0A1E5W4I11e-82A0A1E5W4I1_9POAL; Uncharacterized protein
STRINGPavir.Gb02516.1.p1e-122(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.13e-19zinc finger protein 11