PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 213aa MW: 23863.5 Da PI: 10.2791

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7NG055200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52	1.6e-16	33	77	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g ++++E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ Pavir.7NG055200.1.p 33 GHMSPQEERLIIELHARWGKR-WSRIARRLP-GRTDNEIKNYWRTHM 77 5689***************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.426	12	26	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.1E-9	12	39	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.27E-22	12	85	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.844	27	81	IPR017930	Myb domain
SMART	SM00717	1.0E-15	31	79	IPR001005	SANT/Myb domain
Pfam	PF00249	4.4E-15	33	76	IPR001005	SANT/Myb domain
CDD	cd00167	3.16E-12	35	77	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.7E-20	40	78	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MDRAGGHATG LNRTGKSCRL RWVNYLHPGL KHGHMSPQEE RLIIELHARW GKRWSRIARR 60 LPGRTDNEIK NYWRTHMRKK AQERKMNMSP SSSSSSLTYL SCLLDTAPII GMGSGDNHNG 120 SCVTSTLEST QSVMDGYPMD QIWREIEIPQ APALLGIAEG KDKVCSSIPA LCHHLLFGIT 180 NALRYSGRWK MKKSGCWLHN LVMVNKALAI EG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	4e-17	13	81	37	105	C-Myb DNA-Binding Domain
1msf_C	4e-17	13	81	37	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7NG055200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU652463	0.0	EU652463.1 Saccharum officinarum MYB protein (MYBAS1) mRNA, complete cds, alternatively spliced.
GenBank	HM136781	0.0	HM136781.1 Saccharum hybrid cultivar Co 740 MYB transcription factor variant 2 (MYBAS1) mRNA, complete cds.
GenBank	KM387410	0.0	KM387410.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 1 mRNA, complete cds, alternatively spliced.
GenBank	KM387411	0.0	KM387411.1 Saccharum officinarum cultivar Badila R2R3-MYB transcription factor variant 2 mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004980031.1	1e-95	myb-related protein MYBAS1
Swissprot	Q53NK6	2e-85	MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBL	K3ZJP9	3e-94	K3ZJP9_SETIT; Uncharacterized protein
STRING	Pavir.Gb02200.1.p	1e-150	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP636	37	169

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46130.3	4e-52	myb domain protein 48

Link Out ? help Back to Top
Phytozome	Pavir.7NG055200.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]