PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG021400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 117aa MW: 13062.1 Da PI: 8.9511 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.2 | 2.7e-17 | 26 | 105 | 5 | 86 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +++ ++ +++ l+lp +f+++ g+ +++++tl+ ++s sW+v+l +++s v ++GWk+F+ +ng+k+gD+++++ ++ Pavir.7NG021400.1.p 26 EINTNTIEHN-LSLPLSFCKALGLREPCTVTLKTPTSSTSSWQVRLVPyTNHS--QVDGSGWKGFCYENGIKVGDVCTIQIIE 105 5566666666.**************99977777777777*******3324444..6799********************9775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.41E-18 | 18 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.547 | 21 | 116 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-4 | 23 | 116 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.7E-18 | 24 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.3E-15 | 30 | 106 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.73E-13 | 32 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MVSLNKASYR KYSVFEIGPP AWIMKEINTN TIEHNLSLPL SFCKALGLRE PCTVTLKTPT 60 SSTSSWQVRL VPYTNHSQVD GSGWKGFCYE NGIKVGDVCT IQIIETTLWH VTIARR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG021400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825227.1 | 4e-43 | putative B3 domain-containing protein Os04g0347400 | ||||
TrEMBL | A0A0A9VPG1 | 1e-52 | A0A0A9VPG1_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Gb02050.1.p | 1e-44 | (Panicum virgatum) | ||||
STRING | Pavir.Gb02308.1.p | 4e-45 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24690.1 | 5e-06 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG021400.1.p |