PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG374000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Dof | ||||||||
Protein Properties | Length: 211aa MW: 22609 Da PI: 7.2182 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 116 | 1.5e-36 | 54 | 113 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprC+stntkfCyynnys++qPr+fC+aCrryWt+GG+lr+vPvGg++r+ k+ Pavir.7KG374000.1.p 54 QQQQLECPRCQSTNTKFCYYNNYSTAQPRHFCRACRRYWTHGGTLRDVPVGGASRRAAKR 113 7899************************************************99997665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 4.6E-33 | 56 | 112 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-22 | 58 | 105 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.885 | 58 | 112 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 60 | 96 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MAPAAAASTL SATAAAADAS KRPAASDAEP IGSPVLHHQD GDEAARKHHP RRQQQQQLEC 60 PRCQSTNTKF CYYNNYSTAQ PRHFCRACRR YWTHGGTLRD VPVGGASRRA AKRRRVDADA 120 EPSPPQTTAR AEDGYRLMPD LSAFPFLSDG IFLPQLDLGA APAATFSSWH HSGVPDFYDG 180 LAPWDDGTAG VTGAWGDIAG LELSWPPPGN * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 115 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG374000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824347.1 | 1e-115 | dof zinc finger protein DOF1.6-like | ||||
TrEMBL | A0A3L6PZP9 | 1e-115 | A0A3L6PZP9_PANMI; Dof zinc finger protein PBF-like | ||||
STRING | Pavir.Ga00239.1.p | 1e-153 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14047 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66940.1 | 4e-28 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG374000.1.p |