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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.7KG317200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
MYB |
| Protein Properties |
Length: 316aa MW: 33968.6 Da PI: 6.5056 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.7KG317200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 50.7 | 4e-16 | 15 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd lv+ ++++Gg+ +W+ ++ g++R++k+c++rw +yl
Pavir.7KG317200.1.p 15 KGPWTEEEDRALVEHIQRHGGHvgSWRNLPKAAGLNRCGKSCRLRWTNYL 64
79**********************************************97 PP
|
| 2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++T++E+ l++ ++++lG++ W+tIa ++ gRt++++k++w+++
Pavir.7KG317200.1.p 70 RGNFTADEERLIIALHAELGNK-WSTIATHLD-GRTDNEIKNYWNTH 114
89********************.*********.************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 316 aa
Download sequence Send
to blast |
MGRSPCCCHD AGVKKGPWTE EEDRALVEHI QRHGGHVGSW RNLPKAAGLN RCGKSCRLRW 60
TNYLRPDIKR GNFTADEERL IIALHAELGN KWSTIATHLD GRTDNEIKNY WNTHIRKKLL 120
RMGVDPVTHQ RLPPDDVLIG GAAPGLPEAL LSAAASLGGL NTVLMQAQAL QLLLQAVSGG 180
AAAGAGLVAS FSPAADNAAM PPMLNASSIV PNLQDQQMMN LLAHANYRPA DDYLSNLASF 240
AEHDVVRQPN ASAPAPALLV PASSSPQEVA AAADRRPVQG FSDLLSEAME VPSMCSLEDE 300
HFWKDLLAES NHLPL*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM156904 | 0.0 | AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene). |
| GenBank | BT054398 | 0.0 | BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds. |
| GenBank | HQ858691 | 0.0 | HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds. |
