PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG310700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 404aa    MW: 44812.4 Da    PI: 5.1134
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG310700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.81.4e-29572021128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 
                          lp+G++F+P+d el+ ++L+ k + ++      ++++   i+e+ +i++++P++Lp  +k + ++++fF+k +++y  g+rk+r+     
  Pavir.7KG310700.1.p  57 LPAGVKFDPSDLELL-QHLQGKYSLQNsnspalIDEFIPtIEEMgGICYTHPKNLP-GIKMDGSSLHFFHKVSNAYGCGHRKRRKisgnd 144
                          799************.889999877775677664444445999989**********.6677889********************867777 PP

                  NAM  78 ....tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128
                               ++ +W++tg +k++++++g ++g kk+Lv+ykg+++ g+   + +Wvmh+y+l
  Pavir.7KG310700.1.p 145 gsvcDEHMRWHKTGASKPIYDENGFKKGWKKILVLYKGSKRGGSkidRDNWVMHQYHL 202
                          776655788****************************9998887444689******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-3444221IPR003441NAC domain
PROSITE profilePS5100528.72557221IPR003441NAC domain
PfamPF023652.0E-1158202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MENSWIMTGV GLVKRIRNAS HLIRLRLGEL VAEPYIKCPN CERGIDTSNV SLVWPELPAG  60
VKFDPSDLEL LQHLQGKYSL QNSNSPALID EFIPTIEEMG GICYTHPKNL PGIKMDGSSL  120
HFFHKVSNAY GCGHRKRRKI SGNDGSVCDE HMRWHKTGAS KPIYDENGFK KGWKKILVLY  180
KGSKRGGSKI DRDNWVMHQY HLGADEDEAD GELVVSKVFY QLLSKKIDKS EMDDVEQESE  240
PSAAKIDPRT PNSEPSASKI DPRTPKTDPP QPHLLSNSPC DTEQYTPIQV DQEEEECGTS  300
VRRVKVEAAE CSAWFAELPP AVVVADLPAS DKPRQIRDAP PVGSEPEARI PVNGSNTDLF  360
DGLPDLDPTF PCFVTPSDSV SLADIQFGSQ DSFGGWLDSF KFY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.357890.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG310700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824945.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X2
TrEMBLA0A2S3I7M80.0A0A2S3I7M8_9POAL; Uncharacterized protein
TrEMBLA0A2T7CWA80.0A0A2T7CWA8_9POAL; Uncharacterized protein
STRINGPavir.Ga01597.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-66NAC family protein