PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG280700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 604aa    MW: 62358.4 Da    PI: 6.5377
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG280700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-05110127219
                          EETTTTEEESSHHHHHHH CS
              zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                          +C++Cgk F++++++ +H
  Pavir.7KG280700.1.p 110 VCKNCGKEFTSWELFLQH 127
                          7****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.85E-52349No hitNo description
SMARTSM003550.962648IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.642653IPR007087Zinc finger, C2H2
PfamPF139120.00222748IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
SMARTSM00355260109129IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.33E-8284307No hitNo description
SMARTSM003550.13285307IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221285312IPR007087Zinc finger, C2H2
PfamPF139124.2E-9285309IPR007087Zinc finger, C2H2
PROSITE patternPS000280287307IPR007087Zinc finger, C2H2
SuperFamilySSF576676.33E-8409436No hitNo description
SMARTSM003553.7414436IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182414436IPR007087Zinc finger, C2H2
PfamPF139125.1E-11414437IPR007087Zinc finger, C2H2
PROSITE patternPS000280416436IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MCESSSLMPP SPSPPRPPGQ PPEFKHFCRV CNKGFTCGSA LGGHMRAHGA SDVDGFGADD  60
DSLGDDASAP RCRGGSDDQW DAVGTTSAAA ATHAYALRAN PNRLIRSCQV CKNCGKEFTS  120
WELFLQHGKC SSEDEGDEVQ LDGSRGSQRL LSPPSDGDGD EDPAVAAAAW SKGKRSRRVK  180
LMTIGGGEDH SAMASSQQDT SGEEEDLANC LVMLSSSNAG QTAVTRTDKQ ERCASTAAKE  240
GDGGPALQLQ PISFFIPPPE PPIVALPSAA APPPQCITPS SRNLFECKAC KKVFTSHQAL  300
GGHRASHKKV KGCFAAKFES NASEPARHSS AVGGDSNNIT SGKGAAGGEI NTGVNTEAKT  360
SIYATATSDL DTKTAGTSEV AASLSMSLAP IGHSSPVTAL TVAAAPCKKN SKMHECSVCH  420
RLFTSGQALG GHKRCHWLTS STADPCNPVA NMIPPLTEDI VGVVRHQLTL RQMAVDTAPE  480
PVLDLTIAAS PAALAASVAR PEACGSSSFH LQALAPVHLQ PLAVAVPSTG SHRKKTTATS  540
SHHAGDKAAE DDEADSTAAK RAKLSDLKDV VSMDGEPTGP WLQVGIGSSS AGGDDKSRES  600
AIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG280700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825379.10.0zinc finger protein ZAT4-like
TrEMBLA0A3L6Q3880.0A0A3L6Q388_PANMI; Uncharacterized protein
STRINGPavir.Gb01112.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-13C2H2 family protein