PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.7KG271800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | E2F/DP | ||||||||
Protein Properties | Length: 383aa MW: 42474.8 Da PI: 5.1853 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 78 | 8.9e-25 | 58 | 123 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL llt+kf++ll+++++gi++ln+ a++L dv ++RRiYDi+NVLe+++liekk +n i wkg Pavir.7KG271800.1.p 58 RYDSSLALLTTKFVNLLKQAQDGILDLNSTADKL---DV--QKRRIYDITNVLEGIGLIEKKLRNIICWKG 123 6899******************************...**..****************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.2E-26 | 56 | 125 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 5.7E-31 | 58 | 123 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.58E-16 | 58 | 121 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 2.4E-21 | 60 | 123 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF144074 | 6.54E-28 | 135 | 240 | No hit | No description |
Pfam | PF16421 | 3.6E-27 | 138 | 238 | IPR032198 | E2F transcription factor, CC-MB domain |
CDD | cd14660 | 9.10E-31 | 138 | 239 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 383 aa Download sequence Send to blast |
MTNPDFIGGV GSPVRAPVSG KSARTYKSKA KCSKPVPQTP ISNATSSGNP PTPAGPCRYD 60 SSLALLTTKF VNLLKQAQDG ILDLNSTADK LDVQKRRIYD ITNVLEGIGL IEKKLRNIIC 120 WKGLDESGTN LDNDLSFLKN EVENLNLQEQ ALDEQISKMH KELKALTEDE SRQRWLFLTE 180 DDIKGLPCFQ NQTLIAIKAP HWSSVEVPNP DVMTSESFRR RYRIIIRSTM SPIDLYLVSN 240 FEMKSEEKLD DTTTLASHTH LAKRASSVKG PRTKRAGQSR SKEVVVNAQQ IHETPDLNAS 300 YPFEGVLRKI TPSDVDSDAD YWLLTDDDVS ITDMWRTTPE MQWDQIDPHD FLAEEVSTPG 360 PGTLSQQPAA IGEPTAEGPN HG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 6e-25 | 53 | 124 | 2 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.27811 | 0.0 | callus| leaf |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.7KG271800.1.p |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824202.1 | 0.0 | transcription factor E2FA-like isoform X2 | ||||
TrEMBL | A0A2S3I6J1 | 0.0 | A0A2S3I6J1_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7CUR9 | 0.0 | A0A2T7CUR9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga01887.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP625 | 37 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36010.1 | 7e-99 | E2F transcription factor 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.7KG271800.1.p |