PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG269700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 264aa MW: 29228.6 Da PI: 5.8096 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.8 | 1.1e-19 | 59 | 112 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le++F+ + ++ +e++eLA++lgL+ rqV +WFqN+Ra+++ Pavir.7KG269700.1.p 59 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 112 458**************9899********************************9 PP | |||||||
2 | HD-ZIP_I/II | 124.2 | 5.9e-40 | 57 | 150 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 e+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aL++++dal+++ e+L++e+ +L++ Pavir.7KG269700.1.p 57 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRDKFDALHARVESLKQEKLALTA 146 69******************999******************************************************************* PP HD-ZIP_I/II 90 elke 93 +l+e Pavir.7KG269700.1.p 147 QLQE 150 *987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.63E-18 | 48 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.767 | 53 | 114 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.6E-20 | 56 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.94E-16 | 58 | 115 | No hit | No description |
Pfam | PF00046 | 4.0E-17 | 59 | 112 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-20 | 59 | 121 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.6E-7 | 85 | 94 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 89 | 112 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.6E-7 | 94 | 110 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.6E-14 | 114 | 155 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MDRPDRHQLF MPLPVQQQQL CAPMMMDEQA SFLAGRAAAG GGGGGRGGGG AAGRGGERKR 60 RFTEEQIRSL ESMFHAHHAK LEPREKAELA RELGLQPRQV AIWFQNKRAR WRSKQLEHDY 120 AALRDKFDAL HARVESLKQE KLALTAQLQE LSERLRVRED HRAASGSVDV AATASSSSCN 180 GGGGEAEDDK RNVVLRCVDM EPPESCVLGG ACATPADVSV EESECDDHHH RYRLDYDDGF 240 PESFCATPEL WEPWPLLEWN AVA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 43 | 49 | GGRGGGG |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG269700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728250 | 1e-167 | KJ728250.1 Zea mays clone pUT6527 HB transcription factor (HB66) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826405.1 | 1e-137 | homeobox-leucine zipper protein HOX22-like | ||||
Swissprot | Q01IK0 | 2e-95 | HOX22_ORYSI; Homeobox-leucine zipper protein HOX22 | ||||
Swissprot | Q7XUJ5 | 2e-95 | HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22 | ||||
TrEMBL | A0A2S3I915 | 1e-135 | A0A2S3I915_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga00670.1.p | 1e-158 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4027 | 31 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 3e-35 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG269700.1.p |