PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG238300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 636aa    MW: 73368 Da    PI: 8.466
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG238300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.51.4e-20286991
                 FAR1  9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91
                         + GFsvr+s+ +    ++e+t r+fvCs+eg+ree++ + ++k+ r+r  tr+gC+ak+++ ++k +g+w+v+++  eHnH+lap
  Pavir.7KG238300.1.p  2 KKGFSVRRSYVEWDAGHNEMTLRKFVCSREGFREEKHMNmENKQGRPRGITRVGCRAKFVIARQKnTGQWYVKDFIDEHNHPLAP 86
                         57************99********************99966777889****************999****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.4E-19286IPR004330FAR1 DNA binding domain
PfamPF105511.2E-34207301IPR018289MULE transposase domain
PROSITE profilePS509669.903476510IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
LKKGFSVRRS YVEWDAGHNE MTLRKFVCSR EGFREEKHMN MENKQGRPRG ITRVGCRAKF  60
VIARQKNTGQ WYVKDFIDEH NHPLAPKDLS CLLRSHRRIS DGQKVDILEI EISGIRKYQI  120
FEIQEMQYGG YDKVGYTQKD LYNFYHRHKQ GTIAAGDAQT VIRHLREREC RDADFFFRSF  180
TDDQGHLLGL FWCDNQCLLD YAAFGDVIVF DSTYKTNRYN LPLVPLVGVN HHKCTVVFGY  240
GIISHENTNS FEWLLRTFSD TNIQKHPISV ITDGDLAMQR AIRIVWPNTS HRLCGWHIEQ  300
NFVRNIHDDK VKEAFRVFMY DLCSIEEIER KWRAFLVENE VSKESWLYQM YEVRRIWCAA  360
YHADKCYLEL RSNQRSDSIN ARLQMQLDGK MTLLEMVEHY ETCLSRVRRN EADGDIKALQ  420
SEPFIAPDVS ILEIDANIKA ARKCHLIEIL DGDDTKEYIV GRKDKGDIMV YVKCEFTIEG  480
NLKGVSCSCR KLQSVGTPCS HIFFVLGHRG EHKLRTASAF PPIRKSIMYE YSTTLLRHHD  540
LCNISRAASF SASRSTKGYE RLKGALLQEA DMILPNVGAN EGKMYGLVLP QAPEADCEDI  600
RDVLDPLHVP GKGAPKKKLK STSSKSITKC SLCKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1614620PKKKLKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG238300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441960.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLI1HMH80.0I1HMH8_BRADI; Uncharacterized protein
STRINGPavir.Ga01170.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-78FAR1-related sequence 5