PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7KG071000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 329aa MW: 35315.6 Da PI: 11.0589

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG071000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	112.4	5.8e-35	128	252	216	345
GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305 +s + + + ++L++v+ lsPk++vv+e ea+hn + Fl++f eal+yy++lfd+le +++ vEr +lg+e++ vva eg er Pavir.7KG071000.1.p 128 SSPAAAAKLGRFLQAVRALSPKIMVVAEPEANHNVAAFLKQFEEALNYYVSLFDCLERA-----AAAQRVERLVLGEEVRRVVAREGVER 212 33444445788*******************************************999.....68999***************** PP GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345 +erhe+l++W +r+e+aG++ v ++ +++ + ll+ + Pavir.7KG071000.1.p 213 KERHEQLAQWARRMEAAGMERVGMNFADMMEPRKLLQSLG 252 *********************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	16.92	1	261	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-32	128	252	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MWDVIHPKSG SNVGTVSKPK SPVLAAAISA VIVVIFYARG LWALPLIALA AAAARGFERS 60 LLLPAASSAA RSRCSCAREE RGSCLTPVQI MARSSPSSFG ELLERELNTR LQLSPDSPSV 120 VSSLSPQSSP AAAAKLGRFL QAVRALSPKI MVVAEPEANH NVAAFLKQFE EALNYYVSLF 180 DCLERAAAAQ RVERLVLGEE VRRVVAREGV ERKERHEQLA QWARRMEAAG MERVGMNFAD 240 MMEPRKLLQS LGWGRSSAGR GHLQVHPATT IQHHRRAQPR RPPSRSSPPP PPPTPSPAAP 300 LAAAHAAGPP ESALPSRRAV EPHSAPPP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG071000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC123527	1e-33	AC123527.3 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence.
GenBank	AC151480	1e-33	AC151480.1 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15, complete sequence.
GenBank	AK105237	1e-33	AK105237.1 Oryza sativa Japonica Group cDNA clone:001-113-A03, full insert sequence.
GenBank	AL935154	1e-33	AL935154.2 Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014967	1e-33	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBank	AP014968	1e-33	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBank	FQ377947	1e-33	FQ377947.1 Oryza glaberrima chromosome 12.
GenBank	FQ378034	1e-33	FQ378034.1 Oryza glaberrima chromosome 11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012703080.1	2e-90	scarecrow-like protein 3
TrEMBL	A0A3L6Q630	2e-92	A0A3L6Q630_PANMI; Uncharacterized protein
STRING	Si009933m	5e-90	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP604	38	176

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	6e-14	scarecrow-like 3

Link Out ? help Back to Top
Phytozome	Pavir.7KG071000.1.p