PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG065200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 275aa    MW: 29913.9 Da    PI: 4.7431
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG065200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-1482127555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + ++Er RR+++N+++  Lr+++P+      +K++Ka+i + A+eYI++Lq
  Pavir.7KG065200.1.p  82 NIIMERDRRRKMNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIQQLQ 127
                          5689*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.62877126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-1780139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.04E-1481131No hitNo description
PfamPF000108.0E-1282127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-1783138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-1683132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550218.24E-5192260No hitNo description
CDDcd048730.0071193257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEMGDSFEYY WEMQRLFESD ELSVYLNGAQ EDALSCYDSS SPDGSLSNSS WALAPAVTAA  60
DDARGPGAAA AEGGAAEGAA KNIIMERDRR RKMNEKLYAL RSVVPNITKM DKASIIKDAI  120
EYIQQLQTEE RRVLQELEAG GGARRMDEYG YDEGALLRAE RAKRLKRARP VAPAAAPVEV  180
LELRVSEVGE RVLVVSVTCG KGRDAMARVC RAVEELQLRV VTANITSVAG CLMHTIFVEV  240
DQGDDRARMK RTIEAALTQL DTAAAGSPPS LMSY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.13813e-77leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG065200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0852543e-83BT085254.1 Zea mays full-length cDNA clone ZM_BFb0344G23 mRNA, complete cds.
GenBankEU9697843e-83EU969784.1 Zea mays clone 335640 DNA binding like mRNA, complete cds.
GenBankKJ7279673e-83KJ727967.1 Zea mays clone pUT6080 bHLH transcription factor (bHLH116) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823722.11e-160transcription factor bHLH35-like
TrEMBLA0A2S3I5P21e-158A0A2S3I5P2_9POAL; Uncharacterized protein
STRINGPavir.Ga02255.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.19e-41bHLH family protein