PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG307200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 458aa    MW: 49882.7 Da    PI: 8.3561
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG307200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.1e-31371427360
                          -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          DgynWrKYGqK+vkgsefprsY++Ct+++Cpvk+kve++  d++v ei+Y+geHnh+k
  Pavir.6NG307200.1.p 371 DGYNWRKYGQKKVKGSEFPRSYHKCTHPSCPVKRKVETTI-DGQVAEIVYSGEHNHPK 427
                          9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF540015.69E-3721240No hitNo description
PROSITE profilePS5060013.8328197IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:3.30.310.1301.3E-490191No hitNo description
PfamPF029026.1E-998195IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:2.20.25.803.3E-25364428IPR003657WRKY domain
PROSITE profilePS5081122.63364428IPR003657WRKY domain
SuperFamilySSF1182901.96E-23367428IPR003657WRKY domain
SMARTSM007741.3E-31369427IPR003657WRKY domain
PfamPF031064.3E-23371426IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MGKGSRPAST STGGEKKGEE RVLSHGDVVL IRSDLAILRG PRFINDRIIA FYFAHLSAGL  60
GDDLLLLPPS IPYLLSNLPD PASVAAVAEP LRLASRRLVL LPVNDNPDAS VPEGGSHWTL  120
LVLDNTTSPS GPRFVHHDSI RGAPNLPIAS CLADALRPLL LQSDSRRGAV PVVEGPTPRQ  180
PNGYDCGVYV MAIARAICGW WKNGHGGLRG GDWFEAVRRE VDADSVKAMR GELLQLITTL  240
IQDKANASST SEGNKTRKMQ RHEKIAAWKP VACRPFSSFR SYTKLLQDFT STGSPPITVL  300
EETVLVKPKA TRFPSLPSEL PTEITATIFQ DAGSETTCEE MEVETEQANC CGHLKTCHTV  360
KKPTGSRLSF DGYNWRKYGQ KKVKGSEFPR SYHKCTHPSC PVKRKVETTI DGQVAEIVYS  420
GEHNHPKPRP HRTPLSSTST AEVVVCGVHG TEDTMQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xt9_A2e-24222405209Sentrin-specific protease 8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG307200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683533.10.0uncharacterized protein LOC101761160
TrEMBLT1LWY31e-179T1LWY3_TRIUA; Uncharacterized protein
STRINGPavir.Fa00406.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.23e-30WRKY family protein