PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG262900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 738aa    MW: 87251.4 Da    PI: 8.8322
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG262900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.22.3e-121001444691
                 FAR1  46 kktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                          ++++ +r+t+++ rt+Ck+ ++vk+  +g w+v++l+leHnHel+p
  Pavir.6NG262900.1.p 100 NDDKAKRKTNVQIRTDCKCVMVVKEI-SGIWKVIRLDLEHNHELSP 144
                          3346899*******************.*****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.8E-10100144IPR004330FAR1 DNA binding domain
PfamPF105517.0E-14284344IPR018289MULE transposase domain
PROSITE profilePS509669.718526564IPR007527Zinc finger, SWIM-type
SMARTSM005752.1E-6539566IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MQLEEVTEKD NMNTSDMNGG SGEKGNEEEV NGSQELTEQE IEEFIHKEQQ AASEGNNANV  60
DSMHTPQIGM EFKDRNAAHH FFSFYGFLAG FEVMVSHASN DDKAKRKTNV QIRTDCKCVM  120
VVKEISGIWK VIRLDLEHNH ELSPKDRNQL FNGKKYMTDM EIGIIRTLND NNIPTRKMIA  180
ILSYLRGGLT ALPYKTKDVQ NVRTKINREV TGNDMTQAME YFRKRKIQDP TFYFRFQVDN  240
DMKVKNIFWR EGISLKWYAE YGDCVSFDTT YMTNRYNLPF APFTTETFKW VFETFVESMG  300
GKHPKSIITD QDKAMKSAIC CRIRDGEKVF PNSKHRNCFF HIKSKCYNKN LRCFAINKGL  360
PEKFEDTVNF SVTEDEFEML WQEMIAEYKR ENNKYFNKMW EKRKRFMPVY FKNDFFPFIQ  420
STGRSEGTNA RFKDNVGPTY SIDSFPREYQ RIVDTIKNKE EIEDNFNKQK TPKEMLYGYT  480
IEQQALDLYN RNIYIKFSNQ LEQTELYKYK ETEKGRCFER EMIRKYIVLT DLTEGCEEFS  540
CICGKFNKDG ILCAHILKVI VEEEINKIPD KYFIDRWRKK ERKYHIQKDS DENSTHELLR  600
FNMLSRKAAI LTLKGAKTEE GMQYLDEEFD RLNKHLDFLM QEKERQTTSM ITGESEVHQG  660
EERTNSNNTT EIVILQEPNR IQQKGRPKNP TRLKPLVQLQ KAKRRCVGCF NRKMKDLDKK  720
RKWKGKEKEG MKQSKFK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1702721KRRCVGCFNRKMKDLDKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG262900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311831.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1Z5R3310.0A0A1Z5R331_SORBI; Uncharacterized protein
STRINGPavir.Ia02283.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-66FAR1-related sequence 5