PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG247900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 348aa MW: 36120 Da PI: 7.0924 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.8 | 3.8e-18 | 167 | 221 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F++++++++++++ LAk+l+L rqV vWFqNrRa+ k Pavir.6NG247900.1.p 167 RKKLRLSKEQSAFLEESFKEHSTLNTKQKATLAKQLNLRPRQVEVWFQNRRARTK 221 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125.2 | 3e-40 | 167 | 257 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlskeq+++LEesF+e+++L++++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+++al+een+rL+ke +eLr + Pavir.6NG247900.1.p 167 RKKLRLSKEQSAFLEESFKEHSTLNTKQKATLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCEALTEENRRLHKELAELR-A 255 69*************************************************************************************9.6 PP HD-ZIP_I/II 91 lk 92 lk Pavir.6NG247900.1.p 256 LK 257 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-17 | 149 | 221 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.28E-18 | 156 | 224 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.378 | 163 | 223 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.7E-15 | 165 | 227 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.02E-15 | 167 | 224 | No hit | No description |
Pfam | PF00046 | 1.4E-15 | 167 | 221 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 198 | 221 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 7.9E-26 | 223 | 266 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 4.5E-11 | 223 | 257 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MELGLSLGEP DAGRAAPELG LGLGVGAAGR GEEGGRASAA AGAGPRWWAT PEPAVRLSLV 60 SSSLGLHWPD EGGRSSEVPA RGFDVNRAPS GAAGASALAA PEEEDDEEDP GAGALSSSSP 120 NDSAGSFPLD LGRRAASHAE GAAAARAGGE RSSSRASDED EGTSNARKKL RLSKEQSAFL 180 EESFKEHSTL NTKQKATLAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE YLKRCCEALT 240 EENRRLHKEL AELRALKTAP PFYMHLPATT LSMCPSCERV ASNPTSAAST SAPASSAPPA 300 TAAAAAATAT TARGEHRPSS FAALFAATRS FPLASQPRPP APASNCL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 215 | 223 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.23980 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG247900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012702116.1 | 1e-169 | homeobox-leucine zipper protein HOX27 | ||||
Swissprot | Q6YPD0 | 1e-127 | HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27 | ||||
TrEMBL | K3YL33 | 1e-167 | K3YL33_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Fb01724.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5209 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 3e-67 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG247900.1.p |