 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.6NG140000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
TCP |
| Protein Properties |
Length: 237aa MW: 25404.5 Da PI: 5.6893 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.6NG140000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 112.6 | 5.7e-35 | 82 | 172 | 3 | 81 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec..eaess 78
++drhski T++g RdRR+Rls+ +a++fF+Lqd+LGfdk+skt++WLl+q+kpai+ l + +sss s c + +s
Pavir.6NG140000.1.p 82 YRTDRHSKIRTAQGVRDRRMRLSVGVAREFFALQDRLGFDKASKTVNWLLTQSKPAIDRLHDAadppavvkgggeGSSS-STCcfK-DST 169
589************************************************************5555555555532222.344331.222 PP
TCP 79 sss 81
+++
Pavir.6NG140000.1.p 170 EEA 172
222 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 237 aa
Download sequence Send
to blast |
MPPTASMSAW DGYGAQIFPS DMMLRHQETL EAVLQQPATV VAPLRAPEAA AAEGELRLRD 60
AAPAGADGAG AHGAAAPRRR PYRTDRHSKI RTAQGVRDRR MRLSVGVARE FFALQDRLGF 120
DKASKTVNWL LTQSKPAIDR LHDAADPPAV VKGGGEGSSS STCCFKDSTE EAAEKGRSRV 180
GGRVGPAAAL MEEHGGGEVD WITSDAAAAV PPAQPPQPMD ELEYYYQYYL QLEEMI*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT063457 | 8e-80 | BT063457.1 Zea mays full-length cDNA clone ZM_BFc0065H12 mRNA, complete cds. |
| GenBank | EU975636 | 8e-80 | EU975636.1 Zea mays clone 494952 teosinte branched1 protein mRNA, complete cds. |
| GenBank | KJ726896 | 8e-80 | KJ726896.1 Zea mays clone pUT3439 TCP transcription factor (TCP15) mRNA, partial cds. |
