PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG084200.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 401aa    MW: 41341.6 Da    PI: 7.406
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG084200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.3e-052933301254
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++  L++l+ +      +K + a++L +++eYI+ L
  Pavir.6NG084200.2.p 293 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIRFL 330
                          677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.903281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-9291352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.32E-5291334No hitNo description
SuperFamilySSF474591.07E-11291351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0097292336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MADHQEMIHP AAAAAAGGAS HGHGGGDWWS TAVSCSPDQL PGFGAGLSPA AAADGSNRSR  60
SGNTASSESP GSHSLATGGS SITFQDPAGG VADPSAVVPQ TATGLAGGWN QPYYLDGSGF  120
HGYMSSSRGD QVQLGLRSPS SSNNSLMLQD PHDPNHQFLS NLGLELLSSP TPTSPSGGFR  180
SSSLLRSLTE PAAAAKPSPG FQQYQQQTMN QAPSSIREAL QFTNSTPFWN PSAGFAAEGT  240
ASGPPSGQSR PSTLEGAGDS SSIITKKANT DPTPLKKART GTPSSPLPTF KVRKEKLGDR  300
ITALQQLVSP FGKTDTASVL HETIEYIRFL HQQVGSLSAP YLKNRQQVPH LKVSRDGGEA  360
AAAKGDLTGR GLCLVPISST FAVASETPVD FWSPFGAAFR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG084200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821267.10.0transcription factor bHLH112-like isoform X2
TrEMBLA0A2T7D4B20.0A0A2T7D4B2_9POAL; Uncharacterized protein
STRINGPavir.Fb00501.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.14e-44bHLH family protein