PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG055000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 337aa    MW: 35842.5 Da    PI: 10.1861
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG055000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.8e-14103147347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+  ++ + ++lG+g+W+ Ia+ + + Rt+ q+ s+ qky
  Pavir.6NG055000.2.p 103 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTSRTPTQVASHAQKY 147
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.59896152IPR017930Myb domain
SuperFamilySSF466892.08E-1797152IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-1899151IPR006447Myb domain, plants
SMARTSM007172.5E-11100150IPR001005SANT/Myb domain
CDDcd001672.74E-10103148No hitNo description
Gene3DG3DSA:1.10.10.603.7E-12103146IPR009057Homeodomain-like
PfamPF002498.6E-12103147IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MPQDSRPAGM RLFGVTIAPV PPPAPEADPP DRDPSPNPPV AVREDVMRKC KSMGNLAALG  60
AAADGGGAGA DGGGAGDGYL SDGGLMQSSG KRRRAQERKK AVPWTEEEHR TFLAGLEKLG  120
KGDWRGIAKN FVTSRTPTQV ASHAQKYFLR QTNPNKKKRR SSLFDMMPGE LSPAPNCPIL  180
PPSMAKVHDV VAMTRQLQNS NLEGGSSSNA ANIAPQVGRD LPPVPSFWAT NMDSSFSKLN  240
RMEPFWRTPY PFRPIPRSPD GTSPSTPVVA NIASRVSKAN PTACTSTSLS PRSDPSSLPP  300
KADPPAEMKD LELTVAPPSQ QNMTNMSSQN AELAQA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.344893e-74callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG055000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794580.0HF679458.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB52 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822192.10.0transcription factor MYBS3-like isoform X2
TrEMBLA0A2S3I0510.0A0A2S3I051_9POAL; Uncharacterized protein
STRINGPavir.Fa01954.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.14e-38MYB_related family protein