PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG052300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 27071.8 Da PI: 6.6286 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.9 | 3.7e-13 | 102 | 147 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RRd++N f eLr +P+ +++Ka+ L A YI +L Pavir.6NG052300.1.p 102 THVEAERQRRDKLNRLFCELRAAVPTV-----SRMDKASLLADAAAYIAQL 147 899***********************6.....4****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.09E-16 | 95 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.646 | 98 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.20E-11 | 102 | 148 | No hit | No description |
Pfam | PF00010 | 1.2E-10 | 102 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-15 | 102 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-11 | 104 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDELELACPA STTSSSPSAA SFFSAAGHHH QEPGFVSAEV LERWLGMDDC MLDDGPLLQD 60 GGDEASRAQG IEEQLSGRPP APPAPKRRGR KPGPRSKGTA ITHVEAERQR RDKLNRLFCE 120 LRAAVPTVSR MDKASLLADA AAYIAQLRGR VDQLEAENKL AVAAAAAAPV QENLEVRMVG 180 SEAAALRLTT AARHAPARFM LVLRWLDLPV QHASVCLVGG MTVQDAVVDV PAAALRDERA 240 LRAALLHLLQ QTG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-17 | 101 | 157 | 7 | 63 | Transcription factor MYC2 |
5gnj_B | 4e-17 | 101 | 157 | 7 | 63 | Transcription factor MYC2 |
5gnj_E | 4e-17 | 101 | 157 | 7 | 63 | Transcription factor MYC2 |
5gnj_F | 4e-17 | 101 | 157 | 7 | 63 | Transcription factor MYC2 |
5gnj_G | 4e-17 | 101 | 157 | 7 | 63 | Transcription factor MYC2 |
5gnj_I | 4e-17 | 101 | 157 | 7 | 63 | Transcription factor MYC2 |
5gnj_M | 4e-17 | 101 | 157 | 7 | 63 | Transcription factor MYC2 |
5gnj_N | 4e-17 | 101 | 157 | 7 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG052300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822542.1 | 1e-96 | transcription factor MYC3-like | ||||
TrEMBL | A0A3L6RK90 | 1e-99 | A0A3L6RK90_PANMI; Transcription factor MYC2-like | ||||
STRING | Pavir.Fb00905.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46760.1 | 9e-11 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG052300.1.p |