PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG030600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 125aa    MW: 13802.9 Da    PI: 11.4001
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG030600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.53.7e-1095120126
                          XXXXCHHHCHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKka 26 
                          e+elkrer kq+NRe+ArrsR+RK+ 
  Pavir.6NG030600.2.p  95 ERELKRERQKQSNRESARRSRLRKQF 120
                          89**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.5E-695119No hitNo description
PfamPF001706.7E-895121IPR004827Basic-leucine zipper domain
CDDcd147021.20E-7100119No hitNo description
PROSITE patternPS000360102117IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MRAPPPLHGC LSLCHPQPSQ AVVVRCAAIE SPYPAVKGRS ASKLPVFAPG RVALPNATPN  60
LNIWMDFWSA SPAVQEEASR GLALARRDSV TQLVERELKR ERQKQSNRES ARRSRLRKQF  120
YGSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117RRSRLRK
2111118RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.283569e-54callus| leaf
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG030600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804569.12e-49DNA-binding protein EMBP-1-like
SwissprotP250323e-24EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A2S3GX034e-48A0A2S3GX03_9POAL; Uncharacterized protein
TrEMBLA0A2T7EMY14e-48A0A2T7EMY1_9POAL; Uncharacterized protein
STRINGPavir.Bb00931.1.p6e-52(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.14e-13basic region/leucine zipper transcription factor 68