PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG010600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 326aa    MW: 35855.9 Da    PI: 7.1136
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG010600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-09186226954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+ri +++  L++l+P       +K++ a++L +A++YIk L
  Pavir.6NG010600.1.p 186 ARHRRERISERICILQRLVPGG-----TKMDTASMLDEAIRYIKFL 226
                          699*****************87.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.16E-12168231No hitNo description
PROSITE profilePS5088815.186177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15182241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-14183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-13183236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-7187226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDNITHNSSS SSSWDLDMSL GSHHHPLLFD SHPNTAPPPP PPLPFHLSTS HHHHHHPPPH  60
PPHHRHHHLD PSPSSSLFPP HAHHRLHRLG LDIDPSPHHR HHHEYEQQQE EEPGHHEQQE  120
EMRPQEAGVA QHERGGGEDV EEELGAMKEM MYRIAAMQPV DIDPATIKKP RRRNVRISED  180
PQSVAARHRR ERISERICIL QRLVPGGTKM DTASMLDEAI RYIKFLKRQV QELQHQPPQQ  240
QYPAAAAGGV AAGAGPSTSV VGQPGRPGRP FLPLGPGPLI DWAGLLRPVD IHGPTSSSSS  300
SSMGAAHAAL GFGFSSAGQS SHGMH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG010600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0650181e-178BT065018.1 Zea mays full-length cDNA clone ZM_BFc0135I21 mRNA, complete cds.
GenBankEU9741971e-178EU974197.1 Zea mays clone 442660 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822758.11e-123transcription factor HEC2-like
TrEMBLA0A2T7D2I01e-128A0A2T7D2I0_9POAL; Uncharacterized protein
STRINGPavir.J20328.1.p1e-162(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.12e-43bHLH family protein