PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG325000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 325aa MW: 35025.1 Da PI: 6.3835 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 50.6 | 4.1e-16 | 254 | 297 | 5 | 48 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++Lkk+ Pavir.6KG325000.1.p 254 RRQKRMIKNRESAARSRARKQAYTNELENKVSHLEEENERLKKQ 297 69***************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.0E-14 | 250 | 314 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.622 | 252 | 297 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.6E-15 | 254 | 298 | No hit | No description |
Pfam | PF00170 | 4.0E-14 | 254 | 297 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.94E-12 | 254 | 299 | No hit | No description |
CDD | cd14707 | 4.96E-26 | 254 | 299 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 257 | 272 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MASQAGGGRG GGAGSAQHGQ VQGLSRQGSL YNLTLDEVQN HLGEPLLSMN FDELLKSVLP 60 DGIDPNGTVI GKPDPASSLQ RQGSIMMPPQ LSKKTVDEVW KGIQDGPETS ATDSGRHRRE 120 RQPTLGEMTL EDFLVKAGVV SEGLMKDSDD LPSNMNTVGS DVVAGGTSGL NSGAQWLQQY 180 QQQALEFRQP SLVGSYMASQ LAPQPLSVAT GAMLDSIYSD GQITSPTVGA FSDPQTPGRK 240 RGASGEVVDK VIERRQKRMI KNRESAARSR ARKQAYTNEL ENKVSHLEEE NERLKKQKEF 300 DEILSSALPP EPKHQLRRTS SAAF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.20340 | 0.0 | callus| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}. | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00409 | DAP | Transfer from AT3G56850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG325000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808690.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X2 | ||||
Swissprot | Q9LES3 | 4e-84 | AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
TrEMBL | A0A2T7ECB1 | 0.0 | A0A2T7ECB1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J05672.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2707 | 38 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56850.1 | 2e-82 | ABA-responsive element binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG325000.1.p |
Publications ? help Back to Top | |||
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