PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG314100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 326aa    MW: 36519.5 Da    PI: 5.1589
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG314100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.71.1e-1628114286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergfer.spkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                          W++ e+ +Li+a+ e++++l+rg+lk+++Wee ++ +           ++r + +qC++k+e+l+kry+ ++++         s + +f+
  Pavir.6KG314100.1.p  28 WSELETFHLIDAYDERWTALGRGQLKAQQWEELAADVaarcaatPGVAVHRkTGTQCRHKLEKLRKRYRTEAARPVT------SLWTFFR 111
                          ************************************9999997744455555******************9998875......5899999 PP

             trihelix  84 qle 86 
                          +++
  Pavir.6KG314100.1.p 112 RMD 114
                          998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-1726116No hitNo description
SMARTSM005952.7E-435121IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MMAAGAHDDA DEPPRRFALK KSAPAQPWSE LETFHLIDAY DERWTALGRG QLKAQQWEEL  60
AADVAARCAA TPGVAVHRKT GTQCRHKLEK LRKRYRTEAA RPVTSLWTFF RRMDQLERGP  120
LAASAAYPPA AGSPTGAASD EEEEEEEEEE EEEENEEQEE EEEELVPRNN NTRSINGIIR  180
EFGSGLAPRH PQLQLQQPPS SITPSTAPPR KRVAYEAFQA KAAAAAVAAD KAKEEEVELV  240
RRPSGRGGTN TQLSAVLRDF SEGFMRLERR RMEMQWDIER GWQETEARHA KMLQDAQRQL  300
RDTVAASFAL PPKKARRDYG SSGDS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.74080.0callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG314100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820374.10.0uncharacterized protein LOC112896572
TrEMBLA0A2T7D8N00.0A0A2T7D8N0_9POAL; Uncharacterized protein
TrEMBLA0A2T8IHE00.0A0A2T8IHE0_9POAL; Uncharacterized protein
STRINGPavir.J15698.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100782933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.19e-25Trihelix family protein