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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.6KG273200.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
NAC |
| Protein Properties |
Length: 382aa MW: 42921.3 Da PI: 8.12 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.6KG273200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 169.4 | 1.2e-52 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
l+pGfrFhPtdeelv++yLk+k+++k++++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d+
Pavir.6KG273200.1.p 16 LMPGFRFHPTDEELVSFYLKRKIQQKPISI-ELIRQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSVRPNRVTAAGFWKATGTDR 104
689***************************.89***************9888999*********************************** PP
NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+++s+ +++ +glkk+Lvfykgra +g ktdW+mhe+rl
Pavir.6KG273200.1.p 105 PIYSSeGTKCIGLKKSLVFYKGRAARGMKTDWMMHEFRL 143
****956667***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 382 aa
Download sequence Send
to blast |
MEARNDINMD KSDEILMPGF RFHPTDEELV SFYLKRKIQQ KPISIELIRQ LDIYKYDPWD 60
LPKLASTGEK EWYFYCPRDR KYRNSVRPNR VTAAGFWKAT GTDRPIYSSE GTKCIGLKKS 120
LVFYKGRAAR GMKTDWMMHE FRLPSLNDPS LPKRPIDKTI PLNDSWTICR IFKKTSSMAQ 180
RALSHTWGPP LPGATEAEMF SAFQSVQASE FALESSSCSL QVAPPAPANQ FTSRHGLQGQ 240
QQQQNKVNNP SLDGSSCKLI NFNCSQSLEP QNFPITFPFE VQTSQKTTAA APMFFSAQPD 300
HLGGFVVDSS ADVNGGIGSR SQDSSTRKPG NGFSMNNSDW EAVGRINFPF DLGADSSEDW 360
RFNIPWESFL SPTAVQTELP H*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-52 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-52 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-52 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-52 | 16 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 3e-52 | 16 | 177 | 17 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 3e-52 | 16 | 177 | 17 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
