PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG139800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 237aa MW: 25744.1 Da PI: 5.6977 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 205 | 227 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+ Fs+ L H++ H Pavir.6KG139800.1.p 205 YECKICPAKFSSAQALGGHMSYH 227 99******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.93E-5 | 202 | 231 | No hit | No description |
Pfam | PF13912 | 1.8E-7 | 205 | 229 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.325 | 205 | 232 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 207 | 227 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MNPPPDINST NNEPIVSPLH EALVGTIAMP IVDTSSQSQP IFQAPQEPSK MPMNHNSTLP 60 NFTEERLPLS SLFPHTVPTT VTPVGSIPFQ ERFTANSINQ QQSFSSEHDF LTRPVSDYLN 120 FSDHMAIMSM EAPPITSLLQ GDHVAVLHAH LNTIEGLDLG PIFENPTEVP KEQQVPVMET 180 VGASDNIAQS MSGSMMKNER GGHIYECKIC PAKFSSAQAL GGHMSYHSKA KKKGTN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG139800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2T7DM01 | 1e-149 | A0A2T7DM01_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fa01552.1.p | 1e-173 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11492 | 6 | 12 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG139800.1.p |