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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.6KG096000.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
NAC |
Protein Properties |
Length: 295aa MW: 32358.8 Da PI: 7.5375 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.6KG096000.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 165.8 | 1.5e-51 | 11 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
+ppGfrFhP+d+elv +yL +k++g+ + ++ +vd++k+ePwdLp ++ + kewyfF rd+kyatg+r+nrat+sgyWkatgkd
Pavir.6KG096000.2.p 11 MPPGFRFHPRDDELVLDYLLHKLSGHAHGG-AAMVDVDLNKCEPWDLPaAC--VGGKEWYFFNLRDRKYATGQRTNRATASGYWKATGKD 97
79*************************888.78***************334..4789********************************* PP
NAM 90 kevlsk......kgelvglkktLvfykgrapkgektdWvmheyrle 129
++v++ + ++vg++ktLvfy+grapkg+kt+Wvmhe+rle
Pavir.6KG096000.2.p 98 RAVVAGgegegeGAAVVGMRKTLVFYRGRAPKGSKTEWVMHEFRLE 143
****986665555555***************************985 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 295 aa
Download sequence Send
to blast |
MSSISMMEAR MPPGFRFHPR DDELVLDYLL HKLSGHAHGG AAMVDVDLNK CEPWDLPAAC 60 VGGKEWYFFN LRDRKYATGQ RTNRATASGY WKATGKDRAV VAGGEGEGEG AAVVGMRKTL 120 VFYRGRAPKG SKTEWVMHEF RLEPPPPSQE RRPPAAARHH RLKEDWVLCR VFYKSRTTNP 180 KLPSEDAQDG TPSTEPDLPA SLPLAPLTDT YTAFSAASTV TEQVSCFSGL PALPLKRPVS 240 LGDLLAFDTS EKVSIGTVML SSMPSNSSSV LELPQNCNWN LENVLSQLWN PLGI*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3swm_A | 3e-46 | 6 | 175 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-46 | 6 | 175 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-46 | 6 | 175 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-46 | 6 | 175 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-46 | 6 | 175 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-46 | 6 | 175 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-46 | 6 | 175 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-46 | 6 | 175 | 15 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by auxin. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU958128 | 1e-115 | EU958128.1 Zea mays clone 1674566 NAC domain-containing protein 21/22 mRNA, complete cds. |
Publications
? help Back to Top |
- Le Hénanff G, et al.
Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Xiao D, et al.
SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] - Huo X,Wang C,Teng Y,Liu X
Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] - Chen X, et al.
Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] - Liu C,Wang B,Li Z,Peng Z,Zhang J
TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]
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