PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG096000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 295aa    MW: 32358.8 Da    PI: 7.5375
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG096000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.81.5e-51111431129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          +ppGfrFhP+d+elv +yL +k++g+ +    ++ +vd++k+ePwdLp ++   + kewyfF  rd+kyatg+r+nrat+sgyWkatgkd
  Pavir.6KG096000.2.p  11 MPPGFRFHPRDDELVLDYLLHKLSGHAHGG-AAMVDVDLNKCEPWDLPaAC--VGGKEWYFFNLRDRKYATGQRTNRATASGYWKATGKD 97 
                          79*************************888.78***************334..4789********************************* PP

                  NAM  90 kevlsk......kgelvglkktLvfykgrapkgektdWvmheyrle 129
                          ++v++       + ++vg++ktLvfy+grapkg+kt+Wvmhe+rle
  Pavir.6KG096000.2.p  98 RAVVAGgegegeGAAVVGMRKTLVFYRGRAPKGSKTEWVMHEFRLE 143
                          ****986665555555***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-572174IPR003441NAC domain
PROSITE profilePS5100555.22811174IPR003441NAC domain
PfamPF023654.2E-2612142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSSISMMEAR MPPGFRFHPR DDELVLDYLL HKLSGHAHGG AAMVDVDLNK CEPWDLPAAC  60
VGGKEWYFFN LRDRKYATGQ RTNRATASGY WKATGKDRAV VAGGEGEGEG AAVVGMRKTL  120
VFYRGRAPKG SKTEWVMHEF RLEPPPPSQE RRPPAAARHH RLKEDWVLCR VFYKSRTTNP  180
KLPSEDAQDG TPSTEPDLPA SLPLAPLTDT YTAFSAASTV TEQVSCFSGL PALPLKRPVS  240
LGDLLAFDTS EKVSIGTVML SSMPSNSSSV LELPQNCNWN LENVLSQLWN PLGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-46617515169NAC domain-containing protein 19
3swm_B3e-46617515169NAC domain-containing protein 19
3swm_C3e-46617515169NAC domain-containing protein 19
3swm_D3e-46617515169NAC domain-containing protein 19
3swp_A3e-46617515169NAC domain-containing protein 19
3swp_B3e-46617515169NAC domain-containing protein 19
3swp_C3e-46617515169NAC domain-containing protein 19
3swp_D3e-46617515169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.11654e-33root
Pvr.339864e-33root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG096000.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9581281e-115EU958128.1 Zea mays clone 1674566 NAC domain-containing protein 21/22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822017.11e-175NAC domain-containing protein 21/22-like
SwissprotQ84TE64e-73NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2T7D4J81e-174A0A2T7D4J8_9POAL; Uncharacterized protein
STRINGPavir.Fa02065.1.p1e-162(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.18e-68NAC family protein
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]