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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.6KG096000.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
NAC |
Protein Properties |
Length: 296aa MW: 32487.9 Da PI: 7.1655 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.6KG096000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 166.2 | 1.1e-51 | 11 | 144 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
+ppGfrFhP+d+elv +yL +k++g+ + ++ +vd++k+ePwdLp+++ + kewyfF rd+kyatg+r+nrat+sgyWkatgkd+
Pavir.6KG096000.1.p 11 MPPGFRFHPRDDELVLDYLLHKLSGHAHGG-AAMVDVDLNKCEPWDLPEAACVGGKEWYFFNLRDRKYATGQRTNRATASGYWKATGKDR 99
79*************************888.78***************7666789*********************************** PP
NAM 91 evlsk......kgelvglkktLvfykgrapkgektdWvmheyrle 129
+v++ + ++vg++ktLvfy+grapkg+kt+Wvmhe+rle
Pavir.6KG096000.1.p 100 AVVAGgegegeGAAVVGMRKTLVFYRGRAPKGSKTEWVMHEFRLE 144
***986665555555***************************985 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MSSISMMEAR MPPGFRFHPR DDELVLDYLL HKLSGHAHGG AAMVDVDLNK CEPWDLPEAA 60 CVGGKEWYFF NLRDRKYATG QRTNRATASG YWKATGKDRA VVAGGEGEGE GAAVVGMRKT 120 LVFYRGRAPK GSKTEWVMHE FRLEPPPPSQ ERRPPAAARH HRLKEDWVLC RVFYKSRTTN 180 PKLPSEDAQD GTPSTEPDLP ASLPLAPLTD TYTAFSAAST VTEQVSCFSG LPALPLKRPV 240 SLGDLLAFDT SEKVSIGTVM LSSMPSNSSS VLELPQNCNW NLENVLSQLW NPLGI*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 6e-48 | 6 | 176 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-48 | 6 | 176 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-48 | 6 | 176 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-48 | 6 | 176 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-48 | 6 | 176 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 6e-48 | 6 | 176 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 6e-48 | 6 | 176 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 6e-48 | 6 | 176 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 6e-48 | 6 | 176 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 6e-48 | 6 | 176 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 6e-48 | 6 | 176 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 6e-48 | 6 | 176 | 15 | 169 | NAC domain-containing protein 19 |
4dul_A | 6e-48 | 6 | 176 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 6e-48 | 6 | 176 | 12 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by auxin. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU958128 | 1e-119 | EU958128.1 Zea mays clone 1674566 NAC domain-containing protein 21/22 mRNA, complete cds. |
Publications
? help Back to Top |
- Le Hénanff G, et al.
Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Xiao D, et al.
SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] - Huo X,Wang C,Teng Y,Liu X
Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] - Chen X, et al.
Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] - Liu C,Wang B,Li Z,Peng Z,Zhang J
TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]
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