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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.6KG017200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
NAC |
| Protein Properties |
Length: 371aa MW: 41067.4 Da PI: 9.8123 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.6KG017200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 157.2 | 7e-49 | 40 | 165 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
+pGfrFhPt+eel+++yL+++vegk++++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+
Pavir.6KG017200.1.p 40 MPGFRFHPTEEELIDFYLRRRVEGKRFNI-ELINLVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRM 128
79***************************.89***************888889************************************* PP
NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
v +++++ +glkktLvfy g+apkg +++W+m+eyrl
Pavir.6KG017200.1.p 129 VRVEGNRSIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 165
***********************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 371 aa
Download sequence Send
to blast |
MTRGRAPSSM GGDHHHHHDG SMARGAGGDD GQQQAHDMVM PGFRFHPTEE ELIDFYLRRR 60
VEGKRFNIEL INLVDLYRYD PWDLPALASI GDKEWFFYVP RDRKYRNGDR PNRVTPSGYW 120
KATGADRMVR VEGNRSIGLK KTLVFYVGKA PKGLRSSWIM NEYRLPHGEA DRYQKEISLC 180
RVYKRPGIED NFHLTTTTRS SGSKAAVSME KKHHRTSAAS PRLAPMFDGA HSAAHMSKPY 240
SGTNTIMASS AAARAATMAP QTSMAFLSAA SLSSTTSTEE DGTSLYHLKG ANPPMLPSST 300
HALLNANSTT MATIPIDELS RAIGSYNNQG NPNQPALPSQ GPLLLPFPSM EKIWDWNPLL 360
ESPKVCTSFK *
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-53 | 41 | 185 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-53 | 41 | 185 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-53 | 41 | 185 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-53 | 41 | 185 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 4e-53 | 41 | 185 | 19 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 4e-53 | 41 | 185 | 19 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
