 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.5NG548200.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
MYB |
| Protein Properties |
Length: 553aa MW: 59548.2 Da PI: 4.8397 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.5NG548200.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 52.5 | 1.1e-16 | 43 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT Ed +lvd+vk++G g+W+++ + g+ R++k+c++rw ++l
Pavir.5NG548200.2.p 43 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHL 90
79******************************************9986 PP
|
| 2 | Myb_DNA-binding | 52.7 | 9.9e-17 | 96 | 139 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g++T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++
Pavir.5NG548200.2.p 96 KGAFTPEEERLIIQLHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 139
799*******************.*********.***********96 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway |
| GO:0043068 | Biological Process | positive regulation of programmed cell death |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0045926 | Biological Process | negative regulation of growth |
| GO:0048235 | Biological Process | pollen sperm cell differentiation |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 553 aa
Download sequence Send
to blast |
MYRVKSESDC EMMLQDQMDS PVADDGSSGG GSPHRGSGPP LKKGPWTSAE DAILVDYVKK 60
HGEGNWNAVQ KNTGLFRCGK SCRLRWANHL RPNLKKGAFT PEEERLIIQL HAKMGNKWAR 120
MAAHLPGRTD NEIKNYWNTR IKRCQRAGLP IYPASVCNQS SSEDQQISGD FNCGENISND 180
LLSGNSLYLP DFTSDNFIAN TEALPYAPQL SAASISNLLG QSFASKNCSF MDQADQSGML 240
KQSGYVLPAL SDTVDGVLSS VDQFSNDSEK LKQALGFDYL NEANASSKSI TPFGVTLSGS 300
HAFLNGIFSA SRPINGPLKM ELPSLQDTES DPNSWLKYTL APAMQPTELV DPYLHSPIAT 360
PSVKSESASP RNSGLLEELL HEAQALRSGK NQLPSVRSSS SSAGTPCETT TVVSPEFDLC 420
QEYLDEHHSS FLNECAPFSG YSFTESTPVS AASPDIFQLS KISPAQSPSM GSGEQAVEPK 480
HDTAGSPHPE NLRPDALFSG NTADPSSFND AIAMLLGNDM NAEPKPVLGD GIAFGSSSWG 540
NMPHACEISE FK*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT033925 | 0.0 | BT033925.1 Zea mays full-length cDNA clone ZM_BFc0044D10 mRNA, complete cds. |
| GenBank | BT062692 | 0.0 | BT062692.1 Zea mays full-length cDNA clone ZM_BFb0334D20 mRNA, complete cds. |
| GenBank | BT063828 | 0.0 | BT063828.1 Zea mays full-length cDNA clone ZM_BFc0110K24 mRNA, complete cds. |
| GenBank | HQ858750 | 0.0 | HQ858750.1 Zea mays clone UT1459 MYBGA transcription factor mRNA, partial cds. |
