PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG478700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 293aa    MW: 30008.3 Da    PI: 5.0357
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG478700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.72.3e-2378129959
                          EEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   9 KYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           YGqK++kgs+fpr+YYrC+s+ gCp++k+ver++ +p++v++tY+  Hnh+
  Pavir.5NG478700.1.p  78 DYGQKPIKGSPFPRAYYRCSSNkGCPARKQVERNRAEPDTVIVTYSFVHNHS 129
                          6********************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.13475128IPR003657WRKY domain
SMARTSM007743.6E-2376130IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-2277129IPR003657WRKY domain
SuperFamilySSF1182909.81E-1977129IPR003657WRKY domain
PfamPF031061.4E-1978128IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDGEWSDGAA AASPTVSGGE GKVGPRGVPA DDCPGLSPPV SPPAPSTAAP AASGRRRSAN  60
KRVVTVPLAD VSGPRPKDYG QKPIKGSPFP RAYYRCSSNK GCPARKQVER NRAEPDTVIV  120
TYSFVHNHSD VVPRAQQNRP APKPKPKPAP PEPAESLSSG SHEVAATACA GSVATAEGGG  180
AAAAVEVHDD FRWLYDGVSV TSSTSPSDVD AADEMLYGTM FFGAAPPAPL PNEFGDVAGL  240
FDGEGGGEED AMFAGLGELP ECAMVFRRHA GGGLPMRGGV KVEQPEESTA MS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG478700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814691.11e-135probable WRKY transcription factor 65
TrEMBLA0A3L6SUP71e-152A0A3L6SUP7_PANMI; Putative WRKY transcription factor 65
STRINGPavir.Ea02968.1.p1e-134(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.15e-25WRKY DNA-binding protein 69