PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG437300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 234aa MW: 24946 Da PI: 7.1608 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.4 | 9.4e-31 | 147 | 205 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v+++Yeg Hnh Pavir.5NG437300.1.p 147 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDKDDPSYVVTMYEGVHNHV 205 59********************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.2E-32 | 134 | 206 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-27 | 140 | 206 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.469 | 142 | 207 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-34 | 147 | 206 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-24 | 148 | 204 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MHMALASCNS LPADAACLFP AMAYRHPCDA GGLAASAFYG AARSPAAALL SQPQLAFGAA 60 ALTSLAPPPQ PDAVFERLSE EGVVSSVVPG TTTFGRPPPE MPVEYAVPDA SGYAHHAMGA 120 AAMAGAEGST RTTDRIAFRV RSQEEVLDDG YKWRKYGKKS VKNSPNPRNY YRCSTEGCNV 180 KKRVERDKDD PSYVVTMYEG VHNHVSPGTI YYATQDAASG RFFVAGMHQA LDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-23 | 137 | 207 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 7e-23 | 137 | 207 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG437300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058612 | 1e-102 | KU058612.1 UNVERIFIED: Panicum miliaceum WRKY24-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817958.1 | 1e-127 | probable WRKY transcription factor 57 | ||||
TrEMBL | A0A2S3HST6 | 1e-126 | A0A2S3HST6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb02766.1.p | 1e-172 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 7e-39 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG437300.1.p |