PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.5NG417300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 442aa MW: 50824.9 Da PI: 4.8536 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 50.2 | 8.6e-16 | 170 | 250 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ e+GF + ++ + ++++ +++ +C + g++++ + ++++ Cka++k+ +++d+ w+++++++eHnHela Pavir.5NG417300.1.p 170 EFYNMYSWEIGFGIIYNRRRMNDDKSYRSMQEICCHQGGSDSRVQA---------GTKKVRCKARIKLLRTDDDGWYISEFVKEHNHELA 250 6**************9999988666656666666666666555444.........5899*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.9E-12 | 170 | 250 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MSDAEEAELN QCNDYNAVHE YVASFSDDIA SEEFVRIVDD YNVGGGFCVN GDITEIDDDF 60 SEKNQQEFEQ FAEQEEGNHY SDADYNLQSD QDVPSCDLGD CGCVTIELAQ EICPKYLEVE 120 TIGYKKRQRA RKGAVRSNCR NPRDMGAIEI ALRTSGNRKN QPIFEPEARE FYNMYSWEIG 180 FGIIYNRRRM NDDKSYRSMQ EICCHQGGSD SRVQAGTKKV RCKARIKLLR TDDDGWYISE 240 FVKEHNHELA ESYAEKRECP SHKQLDQNTL DMIRYLREND VSQTKVRCII SRMFGSLGDA 300 PCTKRSVRTI CNQLKREQMD NDVIKKIEIF KEMKEKDPGF QWSVELGENS TIKTLMWCSG 360 KSRAQYSCFG DVITFDTTYC TNFYNMPFGL FVGVNNHFQS IIYAGVLIIE LHAPTRFELE 420 TFGFDTILSC MHRPVQPKSL S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.5NG417300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1Z5RIX1 | 1e-109 | A0A1Z5RIX1_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Eb02571.1.p | 1e-167 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-27 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.5NG417300.1.p |